View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_5 (Length: 465)
Name: NF11171_low_5
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 49375829 - 49375409
Alignment:
| Q |
17 |
aagttgaataagcagttaaatannnnnnnaagataaatgactaatttgggnnnnnnn--gaagttaaatgacatgttaaaactttaattaaggtaaaaga |
114 |
Q |
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| T |
49375829 |
aagttgaataagcagttaaatatttttt-aagataaatgactaatttgggaaaaaagaagaagttaaatgacatgttaaaactttaattaaggtaaaaga |
49375731 |
T |
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| Q |
115 |
gaagttgtgtggttttgccttgaacgtgcactctgtgttgtttaaactttagaaaatgcagtgtgagatgagcaaaacacacgttgcttggtatgggatg |
214 |
Q |
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| T |
49375730 |
gaagttgtgtggttttgccttgaacgtgcactctgtattgtttaaagtttagaaaatgcagtgtgagatgagcaaaacacacgttgcttggtatgggatg |
49375631 |
T |
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| Q |
215 |
agaaagaaattttagggctctttcaaatagtgaatgagaaaaataggagtatggtatgagttaggatgttggcgtgggaaataaaaatggggtgtattta |
314 |
Q |
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| T |
49375630 |
agaaagaaattttagggctctttcaaatagtgaatgagaaaaataggagtatggtatgagttaggatgttggcgtgggaaataaaaatggggtgtattta |
49375531 |
T |
|
| Q |
315 |
gcagtgcatgtagaaaattgcaaagaaaaaagtttgttaactttgggcttcaatcgagaacagaaacagaactagtcgtccacagccacttctcaacggc |
414 |
Q |
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| T |
49375530 |
gcagtgcatgtagaaaattgcaaagaaaaaagtttgttaactttgggcttcaatcgagaacagaaacaggactagtcatccatagccacttctcaacggc |
49375431 |
T |
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| Q |
415 |
atttatagaagactgttactttt |
437 |
Q |
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| T |
49375430 |
atttata-aagactattactttt |
49375409 |
T |
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