View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_6 (Length: 457)
Name: NF11171_low_6
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 6758173 - 6757743
Alignment:
| Q |
16 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagggtgtcctttttcattaataaaagttccaat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
6758173 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagagtgtcctttttcattagtaaaagttccaat |
6758074 |
T |
|
| Q |
116 |
tctgtccgctgtctcggaagttaatcctttctcttccacctacagcacggaaggcagtgcaaaccaaattagtaaacataagaaatcatggcattacaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
6758073 |
tctgtccgctgtctcggaagttaatcccttctcttccacctacagcatggaaggcagtacaaaccaaattagtaaacataagaaatcatgacattacaaa |
6757974 |
T |
|
| Q |
216 |
aaatagcttcctgatattagcagttcagagcaaatattagtgttccaaagaactatgatcagacatattttaaaaggcaacaactaaagtatgtgtccaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6757973 |
aaatagcttcctgatattagcagttcagagcaaatattagtgttccaaagaactatgatcagacatattttaaaaggcaacaactaaagtatgtgtccaa |
6757874 |
T |
|
| Q |
316 |
atcctaagacaatctactgcattatacttgcatagctctagggacatttaaattataaatgcaactannnnnnnatttatggaagnnnnnnnncaagatt |
415 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
6757873 |
atcctaagacaatttactgcattatacttgcatagctctagggacatttaaattataaatgcaactatttttttatttatggaagaaaaaaaacaagatt |
6757774 |
T |
|
| Q |
416 |
taaatcactcagacaatatttgttcatctca |
446 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |
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|
| T |
6757773 |
taaatcactcagacaatatttgttcaactca |
6757743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 25464881 - 25465110
Alignment:
| Q |
16 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagggtgtcctttttcattaataaaagttccaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||| |||||||| || |||| |||||||||||| |
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|
| T |
25464881 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtttcgataacaatgttaaaggatgtcctttctctttaacaaaagttccaat |
25464980 |
T |
|
| Q |
116 |
tctgtccgctgtctcggaagttaatcctttctcttccacctacagcacggaaggcagtgcaaaccaaattagtaaacataagaaatcatggcattacaaa |
215 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||||||||||||||||| | ||| |||| |||||| |||| |||| ||||||||||| || || |||| |
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|
| T |
25464981 |
tctgtcagctgtctcagcagttaatcctttctcttccacctacagcatgaaagtcagtaaaaaccacattattaaagataagaaatcacggtgttgcaaa |
25465080 |
T |
|
| Q |
216 |
aaatagcttcctgatattagcagttcagag |
245 |
Q |
| |
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| ||| ||||| |||||| ||||| |||| |
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|
| T |
25465081 |
atataacttccaaatattaacagtttagag |
25465110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 25475614 - 25475761
Alignment:
| Q |
16 |
catcaacagatccagcatttt-ctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagggtgtcctttttcattaataaaagttccaa |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| | ||| || |||||||| |||||||| || ||| ||||||||||| |
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|
| T |
25475614 |
catcaacagatccagcatttttctaagaaagcactgccttcttgtttaagcttctctaacaacgttaaaggatgtcctttctctctaacaaaagttccaa |
25475713 |
T |
|
| Q |
115 |
ttctgtccgctgtctcggaagttaatcctttctcttccacctacagca |
162 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25475714 |
ttctgtcagctgtctcaacagttaatcctttctcttccacctacagca |
25475761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 40087292 - 40087507
Alignment:
| Q |
16 |
catcaacagatccagcattttctaagaaagcactgccttcttgtttaagtctacgtaataatgttaaagggtgtcctttttcattaataaaagttccaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| ||| | ||||| ||||||||||||||||||||| |||| ||||||||| || |
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|
| T |
40087292 |
catcaacagatccagcattttctaagaaaggactgctatcttgtttcagttttgataatactgttaaagggtgtcctttttctttaacaaaagttccgat |
40087391 |
T |
|
| Q |
116 |
tctgtccgctgtctcggaagttaatcctttctcttccacctacagcacggaaggcagtgcaaaccaaattagtaaacataagaaatcatggcattacaaa |
215 |
Q |
| |
|
|||||| |||||||||| | |||||||||||||||||||||||| || ||| |||| ||||||| ||| ||| |||||||||||||||||| |
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|
| T |
40087392 |
tctgtcagctgtctcggcacttaatcctttctcttccacctacaacataaaagtcagtacaaaccacatt-----aca----aaatcatggcattacaaa |
40087482 |
T |
|
| Q |
216 |
aaatagcttcctgatattagcagtt |
240 |
Q |
| |
|
||||||||||||||| ||| ||||| |
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|
| T |
40087483 |
aaatagcttcctgattttaacagtt |
40087507 |
T |
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