View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_7 (Length: 431)
Name: NF11171_low_7
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 36345453 - 36345864
Alignment:
| Q |
11 |
caaaggcagaagctgcagcaggaggtggtgatggaagtaaatgaaaaaggtatcagaataaagaa-----tatgacgcttcaaattgaaggcgtgtctgg |
105 |
Q |
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| T |
36345453 |
caaaggcagaagctgcagcaggaggtggtgatggaagtaaatgaaaaaggtatcagaatgaagaacctactatgacgcttcaaattgaaggcgtgttcgg |
36345552 |
T |
|
| Q |
106 |
tgtttgacaaagacacatatgattatggttacatttaatttatctacattcttaaattattacaggtgtcaacgttaagtgacgtgtccgatgtatgttt |
205 |
Q |
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| T |
36345553 |
tgtttgacaaagacacatatggttatggttacatttaatttatctacattcttaaattattacaggtgtcaacattaagtgacgtgtccgatgtatgttt |
36345652 |
T |
|
| Q |
206 |
ctgggttattattccatattagatgcatattattctattctaacacaaacattatttttaagttagtaagtatataacttgatgtatgctttgtttaatt |
305 |
Q |
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| T |
36345653 |
ctgggttattattccatattagatgcatattattctattctaacacaaacattatttttaagttagtaagtatataacttgatgtatgctttgtttaatt |
36345752 |
T |
|
| Q |
306 |
tcgctatagctagtgaatgctatgcgatacaagaaagtttagacaacttttaattaatgaatgtatagagtagcaatgtgttagttctagaacctaagct |
405 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36345753 |
tcgctatagctagtgaatgctatgtgatacaagaaagtttagacaacttttaattaatgaatgtatagagtagcaatgtgttagttctagaacctaagct |
36345852 |
T |
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| Q |
406 |
actattgatgtc |
417 |
Q |
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| T |
36345853 |
actattgatgtc |
36345864 |
T |
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