View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11171_low_8 (Length: 427)
Name: NF11171_low_8
Description: NF11171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11171_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 9967066 - 9966649
Alignment:
| Q |
10 |
agcagcagagatgagtgaagatgaaacggtgagagttggttcagaaagtataaaagaaaatggcaatccaaattttcctgggaccgacaatgctgggaac |
109 |
Q |
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| T |
9967066 |
agcatcagagatgagtgaagatgaaacggtgagagttggttcagaaagtataaaagaaaatggcaatccaaattttcctgggaccgacaatgctgggaac |
9966967 |
T |
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| Q |
110 |
gatccaaatcaaattgttggttccaacattagcaccagcagtagcgaaatgaacatggatgatgagaaaacgttcagcattttgattcggggaagaagaa |
209 |
Q |
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| T |
9966966 |
gatccaaatcaaattgtcggttccaacattagcaccagcagtagcgaaatgaacatggatgatgagaaaacgttcagcattttgattcggggaagaagaa |
9966867 |
T |
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| Q |
210 |
accgaaagcaaacactaagaatgccaataagtttgcttactcgacctcatggctctcagtcgtttaaggttatctataaccgtgtagttagaggaaatga |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9966866 |
accgaaagcaaacactaagaatgccaataagtttgcttactcgacctcatggctctcagtcgtttaaggttatctataaccgtgtcgttagaggaaatga |
9966767 |
T |
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| Q |
310 |
ttctcccaggtccatgaatttctcttctagtaaacattgtacagctactgcttaacccacagtactttgttgttgctaatgaattgtagcaattattgtg |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9966766 |
ttctcccaggtccatgaatttctcttctagtaaacattgtacagctactgcttaacccacagtactttgttgttgctaatgaattgtagcaattattgtg |
9966667 |
T |
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| Q |
410 |
gatatagaagaactctac |
427 |
Q |
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| T |
9966666 |
gatatagaagaactctac |
9966649 |
T |
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