View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11172_high_14 (Length: 250)

Name: NF11172_high_14
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11172_high_14
NF11172_high_14
[»] chr2 (9 HSPs)
chr2 (66-242)||(31676614-31676790)
chr2 (122-242)||(31631230-31631350)
chr2 (1-57)||(16209357-16209413)
chr2 (1-55)||(42251264-42251318)
chr2 (4-52)||(23001485-23001533)
chr2 (1-48)||(33171700-33171747)
chr2 (1-57)||(23001412-23001468)
chr2 (1-44)||(30841004-30841047)
chr2 (1-52)||(37810247-37810296)
[»] chr4 (6 HSPs)
chr4 (1-55)||(16457904-16457958)
chr4 (1-55)||(7403075-7403129)
chr4 (1-54)||(19382284-19382335)
chr4 (1-39)||(33414003-33414041)
chr4 (1-42)||(25592297-25592338)
chr4 (1-53)||(9024011-9024063)
[»] chr7 (12 HSPs)
chr7 (1-57)||(11201275-11201331)
chr7 (1-62)||(7017187-7017248)
chr7 (1-62)||(7032545-7032606)
chr7 (1-39)||(2276277-2276315)
chr7 (1-39)||(3235559-3235597)
chr7 (1-39)||(12275839-12275877)
chr7 (64-122)||(34535618-34535676)
chr7 (1-39)||(49107006-49107044)
chr7 (1-49)||(3235660-3235706)
chr7 (5-54)||(36015164-36015213)
chr7 (1-52)||(2276378-2276427)
chr7 (5-48)||(40134381-40134422)
[»] chr3 (9 HSPs)
chr3 (1-48)||(11532536-11532583)
chr3 (1-51)||(46555593-46555643)
chr3 (4-55)||(13540162-13540211)
chr3 (5-48)||(11532426-11532469)
chr3 (1-44)||(19560730-19560773)
chr3 (1-48)||(40554139-40554186)
chr3 (1-39)||(3901594-3901632)
chr3 (1-39)||(36480707-36480745)
chr3 (1-53)||(799342-799394)
[»] chr1 (4 HSPs)
chr1 (1-54)||(34437583-34437636)
chr1 (1-52)||(40668918-40668967)
chr1 (1-36)||(11105974-11106009)
chr1 (3-39)||(38948195-38948231)
[»] chr8 (3 HSPs)
chr8 (1-49)||(43042129-43042177)
chr8 (1-39)||(2288599-2288637)
chr8 (1-39)||(36009923-36009961)
[»] chr5 (2 HSPs)
chr5 (1-52)||(25545319-25545368)
chr5 (1-49)||(43461951-43461999)


Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 31676614 - 31676790
Alignment:
Q  66 ttgaatgcacacacataaacacttgcttgtttggcaagctatttatacaaacattggctacacatttagtttgttacaaaatcagttacaaaacaactaa 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  31676614 ttgaatgcacacacataaacacttgcttgtttggcaagctatttatacaaacattggctacacatttagtttgttacaaaaacagttacaaaacagctaa 31676713  T
Q  166 gtatcctaactgaattaattaattcagtaatcttctgtaattcagattaggtcgagccaaaacatcaggttcttctc 242  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||||| ||||||||  |||||| ||||    
T  31676714 gtatcctaactgaattaattaattcaataatcctccgtaattcagattaggtcgacccaaaacactaggttcatctc 31676790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 31631350 - 31631230
Alignment:
Q  122 gctacacatttagtttgttacaaaatcagttacaaaacaactaagtatcctaactgaattaattaattcagtaatcttctgtaattcagattaggtcgag 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||     
T  31631350 gctacacatttagtttgttacaaaatcagttacaaaacaactaagcatcctaactgaattaattaattcaataatcctctgtaattcagattaagtcgaa 31631251  T
Q  222 ccaaaacatcaggttcttctc 242  Q
    |||||||| || |||| ||||    
T  31631250 ccaaaacaccaagttcatctc 31631230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16209413 - 16209357
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcatttt 57  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||    
T  16209413 tttaaccaattaaagagagtgtgttggaaagtgtgtgttgctagcattcctcttttt 16209357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42251264 - 42251318
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcatt 55  Q
    ||||| |||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  42251264 tttaatcaatcaaagagagtgtgttgaaaagtgtgtgttgctagcatttctcatt 42251318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 23001485 - 23001533
Alignment:
Q  4 aaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctc 52  Q
    ||||||||||| ||||||||||||||||||||||||| |||||| ||||    
T  23001485 aaccaatcaaaaagagtgtgttagaaagtgtgtgttggtagcatccctc 23001533  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 33171700 - 33171747
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcatt 48  Q
    |||||||||||||||||||||||||  |||||||||| ||||||||||    
T  33171700 tttaaccaatcaaagagagtgtgttgaaaagtgtgtggtgctagcatt 33171747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23001468 - 23001412
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcatttt 57  Q
    |||||||||||||||||||| ||||  ||| ||||||||||||| ||| ||||||||    
T  23001468 tttaaccaatcaaagagagtatgttgaaaaatgtgtgttgctagtatttctcatttt 23001412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 30841047 - 30841004
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctag 44  Q
    |||||||||||||| ||||| ||||||||| |||||||||||||    
T  30841047 tttaaccaatcaaaaagagtatgttagaaaatgtgtgttgctag 30841004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 37810247 - 37810296
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctc 52  Q
    ||||||||||||||| ||||||| | ||||  ||||||||||||||||||||    
T  37810247 tttaaccaatcaaagtgagtgtgatggaaa--gtgtgttgctagcattcctc 37810296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16457958 - 16457904
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcatt 55  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16457958 tttaaccaatcaaagagagtgtgttagaaaatgtgtgttgctagcattcctcatt 16457904  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7403129 - 7403075
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcatt 55  Q
    |||||||||| ||||||||| || || |||||||||||| |||||||| ||||||    
T  7403129 tttaaccaattaaagagagtatgataaaaagtgtgtgttactagcatttctcatt 7403075  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19382335 - 19382284
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcat 54  Q
    |||||||||||||| |||||||||| ||||  |||||||||||||||| |||||    
T  19382335 tttaaccaatcaaatagagtgtgttggaaa--gtgtgttgctagcattactcat 19382284  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33414041 - 33414003
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  33414041 tttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt 33414003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25592297 - 25592338
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgct 42  Q
    |||||||||| ||||||||||| ||| |||||||||||||||    
T  25592297 tttaaccaatgaaagagagtgtattaaaaagtgtgtgttgct 25592338  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 9024011 - 9024063
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctca 53  Q
    |||||| ||||||||||| ||||||  ||||||||| ||||||||||| ||||    
T  9024011 tttaacaaatcaaagagaatgtgttgaaaagtgtgtattgctagcatttctca 9024063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11201331 - 11201275
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcatttt 57  Q
    |||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  11201331 tttaactaatgaaagagagtgtgttggaaagtgtgtgttgctagcattcctcatttt 11201275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7017187 - 7017248
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcattttgtttt 62  Q
    |||||||||||||||||||||| ||  ||| ||||||||||||||||| |||||||| ||||    
T  7017187 tttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcatttctcattttttttt 7017248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 7032545 - 7032606
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcattttgtttt 62  Q
    |||||||||||||||||||||| ||  ||| ||||||||||||||||| |||||||| ||||    
T  7032545 tttaaccaatcaaagagagtgtattgaaaaatgtgtgttgctagcatttctcattttttttt 7032606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2276315 - 2276277
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  2276315 tttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt 2276277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3235597 - 3235559
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    |||||||||||||||||||||| || |||||||||||||    
T  3235597 tttaaccaatcaaagagagtgtattggaaagtgtgtgtt 3235559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 12275839 - 12275877
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  12275839 tttaaccaatcgaagagagtgtgttggaaagtgtgtgtt 12275877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 34535618 - 34535676
Alignment:
Q  64 aattgaatgcacacacataaacacttgcttgtttggcaagctatttatacaaacattgg 122  Q
    ||||||||| |||||| || |||||||||||||   |||| ||||||||||||||||||    
T  34535618 aattgaatgtacacacttacacacttgcttgttctacaagttatttatacaaacattgg 34535676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 49107006 - 49107044
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  49107006 tttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt 49107044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 3235660 - 3235706
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattc 49  Q
    |||||||||||||| |||||||||| |||  ||||||||||||||||||    
T  3235660 tttaaccaatcaaaaagagtgtgttggaa--tgtgtgttgctagcattc 3235706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 36015213 - 36015164
Alignment:
Q  5 accaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcat 54  Q
    |||||||||||||||||| ||||||| || |||||| || ||||||||||    
T  36015213 accaatcaaagagagtgttttagaaaatgagtgttgttatcattcctcat 36015164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 2276378 - 2276427
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctc 52  Q
    |||||||||| ||||| ||||||||| ||  |||||||||||||||||||||    
T  2276378 tttaaccaattaaagatagtgtgttaaaa--tgtgtgttgctagcattcctc 2276427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 40134422 - 40134381
Alignment:
Q  5 accaatcaaagagagtgtgttagaaagtgtgtgttgctagcatt 48  Q
    |||||||||||||||||||||  ||| |||||||||||||||||    
T  40134422 accaatcaaagagagtgtgtt--aaaatgtgtgttgctagcatt 40134381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 11532536 - 11532583
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcatt 48  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||    
T  11532536 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgttagcatt 11532583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46555593 - 46555643
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcct 51  Q
    ||||| |||||||||||||||||||| |||||||||||| |||||||||||    
T  46555593 tttaatcaatcaaagagagtgtgttaaaaagtgtgtgttcctagcattcct 46555643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 13540211 - 13540162
Alignment:
Q  4 aaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcatt 55  Q
    ||||||||||||||||||||||  ||| |||||||||||| |||||||||||    
T  13540211 aaccaatcaaagagagtgtgtt--aaaatgtgtgttgctaacattcctcatt 13540162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 11532469 - 11532426
Alignment:
Q  5 accaatcaaagagagtgtgttagaaagtgtgtgttgctagcatt 48  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||    
T  11532469 accaatcaaaaagagtatgttagaaagtgtgtgttgctggcatt 11532426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19560730 - 19560773
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctag 44  Q
    |||||||||||||||||||||||||  ||| |||||||||||||    
T  19560730 tttaaccaatcaaagagagtgtgttgaaaaatgtgtgttgctag 19560773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 40554139 - 40554186
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcatt 48  Q
    |||||||||||||||||||||| ||  ||| |||||||||||||||||    
T  40554139 tttaaccaatcaaagagagtgtattgaaaattgtgtgttgctagcatt 40554186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3901594 - 3901632
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    |||||||||||||||||||||||||  ||||||||||||    
T  3901594 tttaaccaatcaaagagagtgtgttgaaaagtgtgtgtt 3901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 36480745 - 36480707
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  36480745 tttaaccaatcaaagagagtgtgttggaaagggtgtgtt 36480707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 799342 - 799394
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctca 53  Q
    ||||||||||||||||||  || ||  ||||||||||||||||||||| ||||    
T  799342 tttaaccaatcaaagagaaagtattgaaaagtgtgtgttgctagcatttctca 799394  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34437636 - 34437583
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctcat 54  Q
    |||||||||||||||||||| ||||  ||| |||||||||||||||||||||||    
T  34437636 tttaaccaatcaaagagagtttgttgaaaaatgtgtgttgctagcattcctcat 34437583  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 40668967 - 40668918
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctc 52  Q
    |||||||||||||||||||||||||  ||| |||||||||||||||||||||    
T  40668967 tttaaccaatcaaagagagtgtgtt--aaaatgtgtgttgctagcattcctc 40668918  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11105974 - 11106009
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgt 36  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11105974 tttaaccaatcaaagagagtgagttagaaagtgtgt 11106009  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 38948195 - 38948231
Alignment:
Q  3 taaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  38948195 taacaaatcaaagagagtgtgttaaaaagtgtgtgtt 38948231  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43042177 - 43042129
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattc 49  Q
    ||||| ||||||||||||||| ||| |||||||||||||||||||||||    
T  43042177 tttaatcaatcaaagagagtgcgttggaaagtgtgtgttgctagcattc 43042129  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2288637 - 2288599
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  2288637 tttaaccaatcaaagagagtgtgttcgaaagtgtgtgtt 2288599  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 36009923 - 36009961
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 39  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  36009923 tttaaccaaccaaagagagtgtgttggaaagtgtgtgtt 36009961  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 25545319 - 25545368
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattcctc 52  Q
    |||||||||||||||||||||||||  ||| ||||||||| |||||||||||    
T  25545319 tttaaccaatcaaagagagtgtgtt--aaaatgtgtgttgatagcattcctc 25545368  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 43461999 - 43461951
Alignment:
Q  1 tttaaccaatcaaagagagtgtgttagaaagtgtgtgttgctagcattc 49  Q
    ||||||| || ||| ||||||||||||||| |||||||||||| |||||    
T  43461999 tttaaccgattaaaaagagtgtgttagaaaatgtgtgttgctaacattc 43461951  T

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