View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_high_17 (Length: 240)
Name: NF11172_high_17
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1844763 - 1844985
Alignment:
| Q |
1 |
tgccccctttgaatgtgtgtattgagaagtaatttctgttagtttcagtttcaagaaggaaaggtctatacttttacttcctgcttcttgtagaagatca |
100 |
Q |
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| T |
1844763 |
tgccccctttgaatgtgtgtattgagaagtaatttctgttagtttcagtttcaagaaggaaaggtctatacttttacttcctgcttcttgtagaagatca |
1844862 |
T |
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| Q |
101 |
tcaatactttggagttgtgtgtacaagtaagattgaatttagaagaatgcatgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatag |
200 |
Q |
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| T |
1844863 |
tcaatactttggagttgtgtgtacaagtaagattgaatttagaagaatgcatgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatgg |
1844962 |
T |
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| Q |
201 |
atatggaatgtttatatctccac |
223 |
Q |
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| T |
1844963 |
atatggaatgtttatatctccac |
1844985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 223
Target Start/End: Original strand, 1817976 - 1818054
Alignment:
| Q |
145 |
gaatgcatgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatagatatggaatgtttatatctccac |
223 |
Q |
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| T |
1817976 |
gaatccatgtaacatggtgtatgatgttgtgctgttgaatttcctatgccaaatggatatggaattgttaaatctccac |
1818054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 208
Target Start/End: Complemental strand, 1855206 - 1855149
Alignment:
| Q |
151 |
atgtaaaatggtgtatgatcttgtgttgttgaatttcctatgccaaatagatatggaa |
208 |
Q |
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| T |
1855206 |
atgtaacatggtgtatgatcttgtgctgttgaatttcctatgccaaatggatatggaa |
1855149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 1829899 - 1829967
Alignment:
| Q |
1 |
tgccccctttgaatgtgtgtattgagaagtaatttctgttagtttcagtttcaagaaggaaaggtctatac |
71 |
Q |
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| T |
1829899 |
tgccacctgtgaatttgtgtatt-agaagtaatttctgttagtttaagttacaa-aaggaaaggtctatac |
1829967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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