View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11172_high_3 (Length: 430)

Name: NF11172_high_3
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11172_high_3
NF11172_high_3
[»] chr1 (5 HSPs)
chr1 (1-410)||(9796860-9797269)
chr1 (266-410)||(49641073-49641217)
chr1 (245-328)||(52777905-52777988)
chr1 (266-328)||(20775187-20775249)
chr1 (242-327)||(6530897-6530982)
[»] scaffold0164 (1 HSPs)
scaffold0164 (266-410)||(27146-27290)
[»] chr8 (3 HSPs)
chr8 (266-410)||(15193064-15193208)
chr8 (237-328)||(21029588-21029679)
chr8 (303-339)||(20076641-20076677)
[»] chr4 (7 HSPs)
chr4 (266-410)||(18253942-18254086)
chr4 (245-328)||(22176914-22176997)
chr4 (237-327)||(22643579-22643669)
chr4 (245-328)||(35087429-35087512)
chr4 (257-327)||(16986775-16986845)
chr4 (257-328)||(23167432-23167503)
chr4 (287-352)||(13988001-13988066)
[»] chr3 (13 HSPs)
chr3 (266-410)||(53978082-53978226)
chr3 (245-328)||(12285525-12285608)
chr3 (245-328)||(19586683-19586766)
chr3 (287-352)||(31195207-31195272)
chr3 (287-352)||(52773041-52773106)
chr3 (285-325)||(17479406-17479446)
chr3 (237-352)||(1614998-1615112)
chr3 (266-328)||(8836235-8836297)
chr3 (257-327)||(13889995-13890065)
chr3 (265-328)||(7420077-7420140)
chr3 (266-352)||(1610159-1610245)
chr3 (266-328)||(55310170-55310232)
chr3 (239-339)||(18434232-18434332)
[»] chr2 (6 HSPs)
chr2 (287-408)||(20042902-20043023)
chr2 (237-328)||(27036131-27036222)
chr2 (257-327)||(21809109-21809179)
chr2 (239-339)||(30153697-30153797)
chr2 (256-328)||(34890857-34890929)
chr2 (266-327)||(13130806-13130867)
[»] chr5 (6 HSPs)
chr5 (194-328)||(9846904-9847038)
chr5 (251-339)||(17386864-17386952)
chr5 (237-328)||(42139696-42139787)
chr5 (266-328)||(26472138-26472200)
chr5 (257-328)||(26466792-26466863)
chr5 (266-328)||(41218909-41218971)
[»] scaffold0329 (1 HSPs)
scaffold0329 (245-328)||(11234-11317)
[»] chr6 (7 HSPs)
chr6 (237-328)||(28519669-28519760)
chr6 (287-352)||(26133454-26133519)
chr6 (257-325)||(6569597-6569665)
chr6 (242-328)||(21045853-21045940)
chr6 (242-328)||(21069168-21069255)
chr6 (242-328)||(21093545-21093632)
chr6 (303-340)||(5375080-5375117)
[»] chr7 (5 HSPs)
chr7 (237-328)||(18481615-18481706)
chr7 (287-352)||(16256531-16256596)
chr7 (251-339)||(15537133-15537221)
chr7 (258-328)||(8849893-8849963)
chr7 (266-328)||(27776939-27777001)
[»] scaffold0006 (1 HSPs)
scaffold0006 (237-327)||(85888-85978)
[»] scaffold0014 (1 HSPs)
scaffold0014 (287-352)||(95851-95916)
[»] scaffold0013 (1 HSPs)
scaffold0013 (287-352)||(248968-249033)


Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 9796860 - 9797269
Alignment:
Q  1 acaccttgcttgtatcctgaggaaatactctttctagctctaggatcaaagtttagttctatgcacttgtaaagtggaagaaaaacaaagacatccaaaa 100  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  9796860 acaccttgcttgtatcctaagaaaatactctttctagctctaggatcaaaatttagttccatgaacttgtaaagtggaagaaaaacaaagacatccaaaa 9796959  T
Q  101 acttttaactcatttagatcaggtgctttaccaaatctaagatagaaaggagatttattttgtaacaaagagctgggaatacgattgataaggaaagtgg 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9796960 acttttaactcatttagatcagatgctttaccaaatctaagatagaaaggagatttattttgtaacaaagagctgggaatacgattgataaggaaagtgg 9797059  T
Q  201 catgcaaaactgcataagaccaaaaactcttgggcgattttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccct 300  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797060 catgcaaaactgcataagaccaaaaactcttgggcaattttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccct 9797159  T
Q  301 cccattttgttggggggtttcaacacaactagtttgatgttctattcctttatttgagtaaaaatctggcattggaaacttaggaccattatcagttctg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9797160 cccattttgttggggggtttcaacacaactagtttgatgttctattcctttatttgagtaaaaatctggcattggaaacttaggaccattatcagttctg 9797259  T
Q  401 acaattttaa 410  Q
    ||| ||||||    
T  9797260 acagttttaa 9797269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 49641073 - 49641217
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattcctttatttgagtaaaaat 365  Q
    ||||| |||||||||||  |||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   || |||||||    
T  49641073 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaactagtttgatgttctatgcctttagaagaataaaaat 49641172  T
Q  366 ctggcattggaaacttaggaccattatcagttctgacaattttaa 410  Q
    | |||||  |||||| |||||||||||||||||||||| ||||||    
T  49641173 caggcataagaaactcaggaccattatcagttctgacagttttaa 49641217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 52777988 - 52777905
Alignment:
Q  245 tgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| ||||| ||||| |||||||| |||||||||||| | || |||||||| || |||||||||||||| ||||||||||||    
T  52777988 tgaaataataaagctctacctacattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaa 52777905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 20775249 - 20775187
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| ||||||||| || | |||| |||||| | ||||||||||||||||||| ||||||||    
T  20775249 acattgagaatatgtcggtgttttcgttctactcgcccattttgttggggggttccaacacaa 20775187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 6530982 - 6530897
Alignment:
Q  242 gactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacaca 327  Q
    |||||||||||||  |||||  | |||||||  ||||||||  | |||||||  ||||| |||||||||||||| |||||||||||    
T  6530982 gactgaaacaatagagctctagcaacatttaatatatgttgatgttttcttttaaccctaccattttgttggggagtttcaacaca 6530897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0164 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 266 - 410
Target Start/End: Original strand, 27146 - 27290
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattcctttatttgagtaaaaat 365  Q
    ||||| |||||||||||  |||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   || |||||||    
T  27146 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaactagtttgatgttctatgcctttagaagaataaaaat 27245  T
Q  366 ctggcattggaaacttaggaccattatcagttctgacaattttaa 410  Q
    | |||||  |||||| |||||||||||||||||||||| ||||||    
T  27246 caggcataagaaactcaggaccattatcagttctgacagttttaa 27290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 266 - 410
Target Start/End: Complemental strand, 15193208 - 15193064
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattcctttatttgagtaaaaat 365  Q
    ||||| |||||||||||  |||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   || |||||||    
T  15193208 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaactagtttgatgttctatgcctttagaagaataaaaat 15193109  T
Q  366 ctggcattggaaacttaggaccattatcagttctgacaattttaa 410  Q
    | |||||  |||||| |||||||||||||||||||||| ||||||    
T  15193108 caggcataagaaactcaggaccattatcagttctgacagttttaa 15193064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 21029588 - 21029679
Alignment:
Q  237 attttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||||||||| | ||||||||||||||||  || |  || |||||  |||||||||| || || |||||||||||||||||||||||||||    
T  21029588 attttgactgatataataaggctctgcctatgttcaatatgtgttgatgctttctttccactcttccattttgttggggggtttcaacacaa 21029679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 20076677 - 20076641
Alignment:
Q  303 cattttgttggggggtttcaacacaactagtttgatg 339  Q
    |||||||||| || |||||||||||||||||||||||    
T  20076677 cattttgttgaggtgtttcaacacaactagtttgatg 20076641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 266 - 410
Target Start/End: Complemental strand, 18254086 - 18253942
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattcctttatttgagtaaaaat 365  Q
    ||||| |||||||||||  |||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   || |||||||    
T  18254086 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaactagtttgatgttctatgcctttagaagaataaaaat 18253987  T
Q  366 ctggcattggaaacttaggaccattatcagttctgacaattttaa 410  Q
    | |||||  |||||| |||||||||||||||||||||| ||||||    
T  18253986 caggcataagaaactcaggaccattatcagttctgacagttttaa 18253942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 22176914 - 22176997
Alignment:
Q  245 tgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| ||||| ||||| |||||||| |||||||||||| | || |||||||| || |||||||||||||| ||||||||||||    
T  22176914 tgaaataataaagctctacctacattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaa 22176997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 22643669 - 22643579
Alignment:
Q  237 attttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacaca 327  Q
    ||||||| ||||| || ||||||||  | ||||| | |||||||||  |||||||||| |||||||||||||||||||| |||||||||||    
T  22643669 attttgattgaaataacaaggctctaacaacattcaaaatatgttgatgctttctttcaaccctcccattttgttggggagtttcaacaca 22643579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 35087512 - 35087429
Alignment:
Q  245 tgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| ||||| |||||||| ||||| |||||||||||  | ||||| ||||| ||||||||||| ||||| ||||||||||||    
T  35087512 tgaaataataaagctctgccaacattgagaatatgttgatgttttctctctactctcccattttgctggggagtttcaacacaa 35087429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 16986845 - 16986775
Alignment:
Q  257 gctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacaca 327  Q
    |||||||||||||| | |||||||||| ||||||| || || |||||||| |||||||| |||||||||||    
T  16986845 gctctgcctacattcaaaatatgttggtgctttctctcaactctcccattctgttggggagtttcaacaca 16986775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 23167432 - 23167503
Alignment:
Q  257 gctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| || ||||| ||||| |||||| |||||||||| || ||||||||||||||||| || |||||||||    
T  23167432 gctctcccaacattgagaatgtgttggtgctttctttcaactctcccattttgttggggagtctcaacacaa 23167503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 13988066 - 13988001
Alignment:
Q  287 tttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattccttta 352  Q
    ||||||||||| ||||||||||||||||| || |||||| |||| |||||||| || || ||||||    
T  13988066 tttctttctactctcccattttgttggggagtctcaacataacttgtttgatgctcaatgccttta 13988001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 266 - 410
Target Start/End: Complemental strand, 53978226 - 53978082
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattcctttatttgagtaaaaat 365  Q
    ||||| |||||||||||  |||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||   || |||||||    
T  53978226 acattaagaatatgttgatgcttcctttcaactctcccattttgttggggagtttcaacacaactagtttgatgttctatgcctttagaagaataaaaat 53978127  T
Q  366 ctggcattggaaacttaggaccattatcagttctgacaattttaa 410  Q
    | |||||  |||||| |||||||||||||||||||||| ||||||    
T  53978126 caggcataagaaactcaggaccattatcagttctgacagttttaa 53978082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 12285608 - 12285525
Alignment:
Q  245 tgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| ||||| ||||| |||||||| |||||||||||| | || |||||||| || |||||||||||||| |||| |||||||    
T  12285608 tgaaataataaagctctacctacattgagaatatgttggtgtttcctttctactctaccattttgttggggagttttaacacaa 12285525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 19586683 - 19586766
Alignment:
Q  245 tgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| ||||| ||||| |||||||| ||||| |||||| | || |||||||| || |||||||||||||| ||||||||||||    
T  19586683 tgaaataataaagctctacctacattgagaatgtgttggtgtttcctttctactctaccattttgttggggagtttcaacacaa 19586766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 31195207 - 31195272
Alignment:
Q  287 tttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattccttta 352  Q
    ||||||||||| ||||||||||||||||| || ||||||||||| |||||||| || || ||||||    
T  31195207 tttctttctactctcccattttgttggggagtctcaacacaacttgtttgatgctcaatgccttta 31195272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 52773106 - 52773041
Alignment:
Q  287 tttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattccttta 352  Q
    ||||||||||| ||||||||||||||||| || ||||||||||| |||||||| || || ||||||    
T  52773106 tttctttctactctcccattttgttggggagtctcaacacaacttgtttgatgctcaatgccttta 52773041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 325
Target Start/End: Original strand, 17479406 - 17479446
Alignment:
Q  285 gctttctttctaccctcccattttgttggggggtttcaaca 325  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  17479406 gctttctttctactctcccattttgttggggggtttcaaca 17479446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 1614998 - 1615112
Alignment:
Q  237 attttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttg 336  Q
    ||||||| ||||| | ||| ||||| || ||||||| ||| | |||  ||||||||||||| ||||||||||||| ||| || | | ||||||| |||||    
T  1614998 attttgattgaaaaagtaaagctctccccacatttaaaatgtattgatgctttctttctactctcccattttgtt-gggagtcttatcacaacttgtttg 1615096  T
Q  337 atgttctattccttta 352  Q
    ||||||||| ||||||    
T  1615097 atgttctatcccttta 1615112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 8836297 - 8836235
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| |||||||||||  |||||||||| || || |||||||||||||| ||||||||||||    
T  8836297 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaa 8836235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 327
Target Start/End: Complemental strand, 13890065 - 13889995
Alignment:
Q  257 gctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacaca 327  Q
    ||||| || ||||| |||||||||||| ||||||||| ||| | ||||||| ||||||| |||||||||||    
T  13890065 gctcttccaacattaagaatatgttggtgctttctttttactcacccatttcgttggggagtttcaacaca 13889995  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 328
Target Start/End: Complemental strand, 7420140 - 7420077
Alignment:
Q  265 tacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    |||||| || || |||||| | || ||||||||||| |||||||||||||| ||||||||||||    
T  7420140 tacattgaggatgtgttggtgtttcctttctaccctaccattttgttggggagtttcaacacaa 7420077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 352
Target Start/End: Original strand, 1610159 - 1610245
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattccttta 352  Q
    ||||||| ||| |||||  ||||  ||||||| |||||||||||  |||| || |||||||||||  ||||||||||||| ||||||    
T  1610159 acatttaaaatgtgttgatgcttcgtttctactctcccattttgccggggagtctcaacacaactgatttgatgttctatcccttta 1610245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 55310232 - 55310170
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| ||||||| |||  |||||||||| || || |||||||||||||| ||||||||||||    
T  55310232 acattaagaatatattgatgctttctttcaactctaccattttgttggggagtttcaacacaa 55310170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 339
Target Start/End: Original strand, 18434232 - 18434332
Alignment:
Q  239 tttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgat 338  Q
    ||||| |||||||| ||  | ||| |||||||||| ||||||||  | ||||||||||| || ||||||||||| || | ||| ||||||||  ||||||    
T  18434232 tttgaatgaaacaacaaatccctggctacatttagtatatgttgatgttttctttctactcttccattttgttgtggagattctacacaactcttttgat 18434331  T
Q  339 g 339  Q
    |    
T  18434332 g 18434332  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 287 - 408
Target Start/End: Original strand, 20042902 - 20043023
Alignment:
Q  287 tttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattcctttatttgagtaaaaatctggcattggaaacttaggac 386  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    || ||||| || |||||  ||||||  || |    
T  20042902 tttctttccaccctcccattttgttggggggtttcaacacaactagtttgatgttctatgcctttggaagaataaaagtcaggcatgagaaactctggcc 20043001  T
Q  387 cattatcagttctgacaatttt 408  Q
    ||||||||||||| ||| ||||    
T  20043002 cattatcagttctaacagtttt 20043023  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 27036131 - 27036222
Alignment:
Q  237 attttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||||| ||||| ||||| |||||||| ||||| |||||||| ||  | ||||| ||||| ||||||||||| ||||| ||||||||||||    
T  27036131 attttgattgaaataataaagctctgccaacattgagaatatgctgatgttttctctctactctcccattttgctggggagtttcaacacaa 27036222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 21809109 - 21809179
Alignment:
Q  257 gctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacaca 327  Q
    |||||||||||||| | ||||| |||| ||||||| || || |||||||| |||||||| |||||||||||    
T  21809109 gctctgcctacattcaaaatatattggtgctttctctcaactctcccattctgttggggagtttcaacaca 21809179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 30153797 - 30153697
Alignment:
Q  239 tttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgat 338  Q
    ||||| |||||||| || || ||| |||||||||| ||||||||  | ||||||||||| || ||||||||||| || | ||| ||||||||  ||||||    
T  30153797 tttgaatgaaacaacaaagccctggctacatttagtatatgttgatgttttctttctactcttccattttgttgtggagattctacacaactcttttgat 30153698  T
Q  339 g 339  Q
    |    
T  30153697 g 30153697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 34890857 - 34890929
Alignment:
Q  256 ggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||||||| |||||||||||||| ||| | |||||||| || ||  |||||||||| || ||||||||||||    
T  34890857 ggctctgccaacatttagaatatgctggtgttttctttcaactctgacattttgttgaggtgtttcaacacaa 34890929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 13130867 - 13130806
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacaca 327  Q
    ||||| || ||||||||  |||||||||| || || |||||||||||||| |||||||||||    
T  13130867 acattaaggatatgttgatgctttctttcaactctaccattttgttggggagtttcaacaca 13130806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 328
Target Start/End: Original strand, 9846904 - 9847038
Alignment:
Q  194 aaagtggcatgcaaaactgcataagaccaaaaactcttgggcgattttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttcttt 293  Q
    ||||| |||||  |||| |||||||||||||||| ||| ||  ||||||||||| | | ||| |||||||| ||||||| ||| |||||| ||||||| |    
T  9846904 aaagtagcatgacaaacagcataagaccaaaaacacttaggtaattttgactgataaagtaaagctctgccaacatttaaaatgtgttggtgctttctct 9847003  T
Q  294 ctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||||| ||||||||||  |||||||||||||||    
T  9847004 ctaccctaccattttgttcaggggtttcaacacaa 9847038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 17386952 - 17386864
Alignment:
Q  251 aataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgatg 339  Q
    ||||| ||||| |||||||| | |||||||||  | ||||| |||||||| |||||||||||||| | ||| |||||||||||||||||    
T  17386952 aataatgctcttcctacattcaaaatatgttgatgttttctctctacccttccattttgttggggagattccacacaactagtttgatg 17386864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 328
Target Start/End: Complemental strand, 42139787 - 42139696
Alignment:
Q  237 attttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||||||||| | ||||||||||| ||||  || |  || |||||  |||||||||| || || |||||||||||||||||||||||||||    
T  42139787 attttgactgatataataaggctctacctatgttcaatatgtgttgatgctttctttccactcttccattttgttggggggtttcaacacaa 42139696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 26472200 - 26472138
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| |||||||||||  |||||||||| || || |||||||||||||| ||||||||||||    
T  26472200 acattaagaatatgttgatgctttctttcaactctaccattttgttggggagtttcaacacaa 26472138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 26466792 - 26466863
Alignment:
Q  257 gctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    |||||||| ||||||| ||| || ||  | |||||||| |||||||||||||||||||| || |||||||||    
T  26466792 gctctgccaacatttaaaatgtgctgatgttttctttcaaccctcccattttgttggggagtctcaacacaa 26466863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 328
Target Start/End: Original strand, 41218909 - 41218971
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||||| ||| |||||  |||| ||||| |||  ||||||||||||||||||||||||||||    
T  41218909 acatttaaaatgtgttgatgcttcctttcaaccaccccattttgttggggggtttcaacacaa 41218971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 245 - 328
Target Start/End: Complemental strand, 11317 - 11234
Alignment:
Q  245 tgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| ||||| ||||| |||||||| |||||||||||| | || |||||||| || |||||||||||||| ||||||||||||    
T  11317 tgaaataataaagctctacctacattgagaatatgttggtgtttcctttctactctaccattttgttggggagtttcaacacaa 11234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 28519669 - 28519760
Alignment:
Q  237 attttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||||||||| | ||||| ||||||||||  || || || |||||  |||||||||| || ||||||||||||||||||||||||||||||    
T  28519669 attttgactgatataataaagctctgcctatgttgagtatgtgttgatgctttctttccactctcccattttgttggggggtttcaacacaa 28519760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 26133519 - 26133454
Alignment:
Q  287 tttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattccttta 352  Q
    ||||||||||| ||||||||||||||||| || ||||||||||| |||||||| || || ||||||    
T  26133519 tttctttctactctcccattttgttggggagtctcaacacaacttgtttgatgctcaatgccttta 26133454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 325
Target Start/End: Original strand, 6569597 - 6569665
Alignment:
Q  257 gctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaaca 325  Q
    ||||| |||||||| ||||||| |||  | ||||| ||||| |||||||||||||||||||||||||||    
T  6569597 gctcttcctacattgagaatatattgatgttttctctctactctcccattttgttggggggtttcaaca 6569665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 21045940 - 21045853
Alignment:
Q  242 gactgaaacaataaggctctgcctacatttagaatatgtt-ggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    |||||||| ||||  ||||| || ||||| |||||||||| || | |||||||| || ||||||||||||||||| ||||||||||||    
T  21045940 gactgaaataatagagctcttcccacattaagaatatgtttggtgatttctttcaactctcccattttgttggggagtttcaacacaa 21045853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 21069255 - 21069168
Alignment:
Q  242 gactgaaacaataaggctctgcctacatttagaatatgtt-ggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    |||||||| ||||  ||||| || ||||| |||||||||| || | |||||||| || ||||||||||||||||| ||||||||||||    
T  21069255 gactgaaataatagagctcttcccacattaagaatatgtttggtgatttctttcaactctcccattttgttggggagtttcaacacaa 21069168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 328
Target Start/End: Complemental strand, 21093632 - 21093545
Alignment:
Q  242 gactgaaacaataaggctctgcctacatttagaatatgtt-ggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    |||||||| ||||  ||||| || ||||| |||||||||| || | |||||||| || ||||||||||||||||| ||||||||||||    
T  21093632 gactgaaataatagagctcttcccacattaagaatatgtttggtgatttctttcaacactcccattttgttggggagtttcaacacaa 21093545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 340
Target Start/End: Original strand, 5375080 - 5375117
Alignment:
Q  303 cattttgttggggggtttcaacacaactagtttgatgt 340  Q
    |||||||||| || ||||||||||||||||||||||||    
T  5375080 cattttgttgaggtgtttcaacacaactagtttgatgt 5375117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 328
Target Start/End: Original strand, 18481615 - 18481706
Alignment:
Q  237 attttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||||||||| | ||||||||||||||||  || |  || |||||  |||||||||| || || |||||||||||||||||||||||||||    
T  18481615 attttgactgatataataaggctctgcctatgttcaatatgtgttgatgctttctttccactcttccattttgttggggggtttcaacacaa 18481706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 16256596 - 16256531
Alignment:
Q  287 tttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattccttta 352  Q
    ||||||||||| ||||||||||||||||| || ||||||||||| |||||||| || || ||||||    
T  16256596 tttctttctactctcccattttgttggggagtctcaacacaacttgtttgatgctcaatgccttta 16256531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 339
Target Start/End: Complemental strand, 15537221 - 15537133
Alignment:
Q  251 aataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaactagtttgatg 339  Q
    ||||| ||||| |||||||| | |||||||||  | ||||| |||||||| |||||||||| ||| | ||| |||||||||||||||||    
T  15537221 aataatgctcttcctacattcaaaatatgttgatgttttctctctacccttccattttgtttgggagattccacacaactagtttgatg 15537133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 328
Target Start/End: Complemental strand, 8849963 - 8849893
Alignment:
Q  258 ctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    |||| |||||||| || ||||||||| | |||||||| ||||| |||||||||||  |||| |||||||||    
T  8849963 ctctacctacattaaggatatgttggtgttttctttcaaccctaccattttgttgatgggtctcaacacaa 8849893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 27777001 - 27776939
Alignment:
Q  266 acatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacacaa 328  Q
    ||||| |||||||||||  |||| ||||| |||  ||||||||||||||| ||||||||||||    
T  27777001 acattgagaatatgttgatgcttcctttcaaccaccccattttgttggggtgtttcaacacaa 27776939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 327
Target Start/End: Complemental strand, 85978 - 85888
Alignment:
Q  237 attttgactgaaacaataaggctctgcctacatttagaatatgttggcgctttctttctaccctcccattttgttggggggtttcaacaca 327  Q
    ||||||| |||||||| |  |||||||||||||| || ||||| ||  |||||||||| |||||  ||||||| || ||||||||||||||    
T  85978 attttgattgaaacaaaagagctctgcctacattaagtatatgctgatgctttctttcaacccttgcattttgctgaggggtttcaacaca 85888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 95851 - 95916
Alignment:
Q  287 tttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattccttta 352  Q
    ||||||||||| ||||||||||||||||| || |||||| |||| |||||||| || || ||||||    
T  95851 tttctttctactctcccattttgttggggagtctcaacataacttgtttgatgctcaatgccttta 95916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 248968 - 249033
Alignment:
Q  287 tttctttctaccctcccattttgttggggggtttcaacacaactagtttgatgttctattccttta 352  Q
    ||||||||||| ||||||||||||||||| || ||||||||||| |||| ||| || || ||||||    
T  248968 tttctttctactctcccattttgttggggagtctcaacacaacttgtttaatgctcaatgccttta 249033  T

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