View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_high_4 (Length: 422)
Name: NF11172_high_4
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_high_4 |
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| [»] chr6 (8 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold1113 (1 HSPs) |
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| [»] scaffold0961 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 382; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 32683409 - 32683829
Alignment:
| Q |
1 |
tgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaagccgaagttcaaataaaggatgtt |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32683409 |
tgaagaaggtacatctaaggcagctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaaagccgaagttcaaataaaggatgtt |
32683507 |
T |
|
| Q |
101 |
gaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtgagtgttagacacttgggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
32683508 |
gaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagttttagacacttgggaa |
32683607 |
T |
|
| Q |
201 |
gtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactatcgcaatgtgtcggtaatattatggttttgactcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32683608 |
gtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactatcgtaatgtgtcggtaatattatggttttgactcat |
32683707 |
T |
|
| Q |
301 |
tctccagaattatagccatcaatctcttatattataaattgcatggttcgggggaaaagtaatagtcccaatatattgaatcatccttattggtttttaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32683708 |
tctccagaattatagccatcaatctcttatattataaattgcgtggttcgggggaaaagtaatagtcccaatatattgaatcatccttattggtttttaa |
32683807 |
T |
|
| Q |
401 |
gtgacaagttttgagttttggc |
422 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
32683808 |
gtgacaagttttgatttttggc |
32683829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 32685119 - 32685382
Alignment:
| Q |
1 |
tgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaagccgaagttcaaataaaggatgtt |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32685119 |
tgaagaaggtacatctaaggcagctcaagttccaaaccagcaggagaatgaagcttaagatgaaagat-tccaaaagccgaagttcaaataaaggatgtt |
32685217 |
T |
|
| Q |
101 |
gaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtgagtgttagacacttgggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
32685218 |
gaaggctgtaaataaaattaggcagttgtgtatagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagttttagacacttgggaa |
32685317 |
T |
|
| Q |
201 |
gtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactat |
265 |
Q |
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| T |
32685318 |
gtgccaagctcgcaaatcttgtctatgcgtgtctggttattatgtactgattcctatataactat |
32685382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 83 - 248
Target Start/End: Complemental strand, 33010825 - 33010662
Alignment:
| Q |
83 |
gttcaaataaaggatgttgaaggctgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttttgttttatccttaagttgtga |
182 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||| | ||| ||||||||||| |||||||||| ||||||||| |
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| T |
33010825 |
gttcaaataaaggatgttgaagg-tgtaaataaaattaagcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtga |
33010727 |
T |
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| Q |
183 |
gtgttagacacttgggaagtgccaagctcgcaaatctt-gtctatgcgtgtctggttattatgtact |
248 |
Q |
| |
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| |||| |||||||||| |||||||| ||||||||| |||||||||||| ||||||||||||||| |
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| T |
33010726 |
--gatagatacttgggaagagccaagcttgcaaatcttggtctatgcgtgtttggttattatgtact |
33010662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 237 - 351
Target Start/End: Original strand, 32685388 - 32685505
Alignment:
| Q |
237 |
ttattatgtactgattcctatataactat---cgcaatgtgtcggtaatattatggttttgactcattctccagaattatagccatcaatctcttatatt |
333 |
Q |
| |
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||||| |||||| |||||||||||||||| || ||||||| |||||||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
32685388 |
ttattctgtactaattcctatataactattatcgtgatgtgtctgtaatattctggctttgaatcattctccagaattatagccatcaatttcttatatt |
32685487 |
T |
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| Q |
334 |
ataaattgcatggttcgg |
351 |
Q |
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||||||||| |||||||| |
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| T |
32685488 |
ataaattgcgtggttcgg |
32685505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 33010942 - 33010870
Alignment:
| Q |
1 |
tgaagaaggtacatctaaggcagctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatcca |
73 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| |||| | |||||||||||||||||| ||||| |
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| T |
33010942 |
tgaaaaagctacatctaaggcagctgaagttccaaaccagcaggagtacgaagcttaagatgaaagacatcca |
33010870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 263
Target Start/End: Complemental strand, 34925256 - 34925139
Alignment:
| Q |
152 |
aactatgttttgttttatccttaagttgtgagtgttagacacttggga-agtg----ccaagctcgcaaatctt-gtctatgcgtgtctggttattatgt |
245 |
Q |
| |
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|||||||||| |||||||| | |||||||||||||||||||||||||| ||| |||||||| |||||||| ||||||| |||||| |||||| ||| |
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| T |
34925256 |
aactatgtttagttttatcatgaagttgtgagtgttagacacttgggagggtgataaccaagctctcaaatcttggtctatgtgtgtcttgttattctgt |
34925157 |
T |
|
| Q |
246 |
actgattcctatataact |
263 |
Q |
| |
|
||| ||||||||||||| |
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|
| T |
34925156 |
actatttcctatataact |
34925139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 33011205 - 33011259
Alignment:
| Q |
22 |
agctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
76 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||| ||||||||||||||| |
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| T |
33011205 |
agctgaagttccaaaccagcaggagaacgaagattaagaagaaagaaatccaaaa |
33011259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 28734759 - 28734811
Alignment:
| Q |
24 |
ctgaagttccaaaccagctggagaatgaagcttaagatgaaagaaatccaaaa |
76 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||| ||||||| | |||||||| |
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|
| T |
28734759 |
ctgaagttccaaaccagcagaagattgaagcttatgatgaaaaacatccaaaa |
28734811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 368 - 421
Target Start/End: Original strand, 50860925 - 50860978
Alignment:
| Q |
368 |
ccaatatattgaatcatccttattggtttttaagtgacaagttttgagttttgg |
421 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
50860925 |
ccaatatgttgaatcatccttattggtttttaagtgacaagttttgatttttgg |
50860978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 422
Target Start/End: Complemental strand, 13603545 - 13603493
Alignment:
| Q |
370 |
aatatattgaatcatccttattggtttttaagtgacaagttttgagttttggc |
422 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
13603545 |
aatatattgaatcatccttattggtttttaagtgacaggttttgatttttggc |
13603493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1113 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1113
Description:
Target: scaffold1113; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 1403 - 1336
Alignment:
| Q |
113 |
taaaattaggcagttgtgt--agagtaagaaaggaaaactgaactatgttttgttttatccttaagtt |
178 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||| |||||| ||||||||||| ||||| |
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| T |
1403 |
taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt |
1336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0961 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0961
Description:
Target: scaffold0961; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 2214 - 2281
Alignment:
| Q |
113 |
taaaattaggcagttgtg--tagagtaagaaaggaaaactgaactatgttttgttttatccttaagtt |
178 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||| |||| |||||| ||||||||||| ||||| |
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|
| T |
2214 |
taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt |
2281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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