View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_high_5 (Length: 405)
Name: NF11172_high_5
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_high_5 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 37540954 - 37541352
Alignment:
| Q |
11 |
cacagagagtgtatgtttggttccacttttggagtat----gcaaagttgattcaagaagtgtttgaattaattttaccaccataattaattctaactcg |
106 |
Q |
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| T |
37540954 |
cacagagagtgtatgtttggttccacttctggagtatatatgcaaagttgattcaagaagtgtttgaattaattttaccaccataattaattctaactcg |
37541053 |
T |
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| Q |
107 |
aagcaagaatttaaagttttagcttctacaaatgttttttagcctcaaatttatcgttcaagattaaaaacataacttttgatcagaatcaatattacaa |
206 |
Q |
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| T |
37541054 |
aagctagaatttaaagttttagcttctacaaatgttttttagcctcaaatttatcgttcaagattaaaaacataacttttgatcatagtcaatattacaa |
37541153 |
T |
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| Q |
207 |
aatcaacttttacatatacaccaaagagatatattaccgctttgaagggttactttccattacagttgaatccagggagtaatccatttccaagctgcaa |
306 |
Q |
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| T |
37541154 |
aatcaacttttacatatacacgaaagagatatattaccgctttgaagggttactttccattacagttgaatccagggagtaatccatttccaagctgcaa |
37541253 |
T |
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| Q |
307 |
atataaagtaataatcatgaaaaaacttagaatttacaaaattcactttgaaatgtttaaaatagatttttcccgcagattctacaattgatttttagc |
405 |
Q |
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| T |
37541254 |
atataaagtaataatcatgaaaaaacttagaatttacaaaattcactttgaaatgtttaaaatagatttttcccgcagattctacaattgatttttagc |
37541352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 326
Target Start/End: Original strand, 37540840 - 37540933
Alignment:
| Q |
233 |
agatatattaccgctttgaagggttactttccattacagttgaatccagggagtaatccatttccaagctgcaaatataaagtaataatcatga |
326 |
Q |
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| T |
37540840 |
agatatattaccgctttgaagggccgttttccagtactgttgaatccagtgagtattccatttccatgctgcaaatataaagtaatcatcatga |
37540933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Complemental strand, 1227759 - 1227699
Alignment:
| Q |
100 |
taactcgaagcaagaatttaaagttttagcttctacaaatgttttttagcctcaaatttat |
160 |
Q |
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| T |
1227759 |
taactcgaagacaaaatttaaagtttttgcttctacaattgatttttagcatcaaatttat |
1227699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 3845305 - 3845255
Alignment:
| Q |
19 |
gtgtatgtttggttccacttttggagtatgcaaagttgattcaagaagtgt |
69 |
Q |
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| T |
3845305 |
gtgtatgtttggttccacttttggagtaaccaaaattgattctagaggtgt |
3845255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 10400890 - 10400839
Alignment:
| Q |
18 |
agtgtatgtttggttccacttttggagtatgcaaagttgattcaagaagtgt |
69 |
Q |
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| T |
10400890 |
agtgtatgtttggttccactcttggaggatgcaaaattgattctagaggtgt |
10400839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 1037 - 962
Alignment:
| Q |
89 |
ataattaattctaactcgaagcaagaatttaaagttttagcttctacaaatgttttttagcctcaaatttatcgttcaa |
167 |
Q |
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| T |
1037 |
ataattgattctaactagaagctagaatttgaagtttttacctctacaa---ttttttagcctctaatttattgttcaa |
962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 5268181 - 5268276
Alignment:
| Q |
55 |
tgattcaagaagtgtttgaattaattttaccaccataattaattctaactcgaagcaagaatttaaagttttagcttctacaaatgttttttagcct |
151 |
Q |
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| T |
5268181 |
tgattctagaagtgta-gaattaattttgcctccaaaattgattctaactcgaagctagaatttgtactttgggcttctacaattggttcttagcct |
5268276 |
T |
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