View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_high_6 (Length: 354)
Name: NF11172_high_6
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 24696678 - 24697026
Alignment:
| Q |
1 |
agaacatgtcccatatgatgtggtgggtcttttctaaatcacagagaaatgcaaatagcagaaaattgaaacatgtcttcttcaagcaatggagaggagc |
100 |
Q |
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| T |
24696678 |
agaacatgtcccatatgaagtggtgggtcttttctaaatcacagagaaatgcaaatagcagaaaattgaaacatgtcttcttcaagcaatggagaggagc |
24696777 |
T |
|
| Q |
101 |
tatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtaattgcggttcaaaaatc |
200 |
Q |
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| T |
24696778 |
tatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtagttgcggttcaaaaatc |
24696877 |
T |
|
| Q |
201 |
ttacaacccattcttgacggcatgtgaatgaattccacaccattatccacatctgtttaatgaaaaacgcctcagagttattgatgcaacgaaccatttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24696878 |
ttacaacccattcttgacggcatgtgaatgaattccacaccattatccacatctgtttaatgaaaaacgcctcagagttattgatgcaacgaaccatttc |
24696977 |
T |
|
| Q |
301 |
agtataaatactgtaagcaactactttatggtcaactccctatgctact |
349 |
Q |
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| T |
24696978 |
agtataaatactgtaagcaactactttatggtcaactcccaatgctact |
24697026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 24726526 - 24726767
Alignment:
| Q |
29 |
cttttctaaatcacagagaaatgcaaatagcagaaaattgaaacatgtcttcttcaagcaatggagaggagctatttgggaaaataatacggtaggactg |
128 |
Q |
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| T |
24726526 |
cttttctaaatcacata--aatgcaaatggcagaaaatcaaaatgggcattcttcaggcaatggagaggaactacttgggaaaataatatgcgaggattg |
24726623 |
T |
|
| Q |
129 |
tataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtaattgcggttcaaaaatcttacaacccattcttgacggcatgtgaa |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| ||| || ||||||||||||| ||||||| |
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| T |
24726624 |
tataaacagtctgcacaacagcgagaacagagaccaccattgcaacgaagttgtaattgcgattcagaaatgttaaaagccattcttgacggtatgtgaa |
24726723 |
T |
|
| Q |
229 |
tgaattccacaccattatccacatctgtttaatgaaaaacgcct |
272 |
Q |
| |
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||| |||| || || ||||||| ||||||| || |||||||| |
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| T |
24726724 |
cgaagtccaaactgttctccacatttgtttaaagataaacgcct |
24726767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 24797340 - 24797463
Alignment:
| Q |
80 |
cttcaagcaatggagaggagctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagt |
179 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| | ||||| || |||||| ||||||||||||| ||||| | ||| |||||||||||||||| |
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| T |
24797340 |
cttcaagcaatggagaggaattatttgggaaaattataggctaggattgcataaactgtctgcacaacagtgagaataaagagaaccgttgcaacgaagt |
24797439 |
T |
|
| Q |
180 |
tgtaattgcggttcaaaaatctta |
203 |
Q |
| |
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|||||||| ||||||||||||||| |
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| T |
24797440 |
tgtaattggggttcaaaaatctta |
24797463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 80 - 201
Target Start/End: Complemental strand, 24537923 - 24537802
Alignment:
| Q |
80 |
cttcaagcaatggagaggagctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagt |
179 |
Q |
| |
|
|||||||||||||||| || ||||||||||||| ||| | ||||| || |||||| ||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
24537923 |
cttcaagcaatggagatgaattatttgggaaaattataggctaggattgcataaactgtctgcacaacagtgagaatagagagaaccgttgcaacgaagt |
24537824 |
T |
|
| Q |
180 |
tgtaattgcggttcaaaaatct |
201 |
Q |
| |
|
||||||||||||||| |||||| |
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| T |
24537823 |
tgtaattgcggttcataaatct |
24537802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 24826438 - 24826561
Alignment:
| Q |
80 |
cttcaagcaatggagaggagctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacagagaccaccgttgcaacgaagt |
179 |
Q |
| |
|
|||||||||||| ||| || ||| ||| || ||||| | | |||||||||||||||||||||||||| |||||||||||| |||| ||||||| ||||| |
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| T |
24826438 |
cttcaagcaatgtagatgaactacttgtgataataaaatgctaggactgtataaacagtctgcacaatagcgagaacagacaccagcgttgcagggaagt |
24826537 |
T |
|
| Q |
180 |
tgtaattgcggttcaaaaatctta |
203 |
Q |
| |
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|||||| | |||||| |||||||| |
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| T |
24826538 |
tgtaatcgtggttcataaatctta |
24826561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 38 - 249
Target Start/End: Original strand, 24854420 - 24854637
Alignment:
| Q |
38 |
atcacagagaaatgcaaatagcagaaaattgaaacatgtcttcttcaagcaatggagaggagcta---tttgggaaaataatacggtaggactgtataaa |
134 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||| | |||||||||||||||||||| | || |||||| |||||||| | || || |||||||| |
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|
| T |
24854420 |
atcacatagaaatgaaaatagcagaaaatcaaaatgcgccttcttcaagcaatggagagaaattattgtttggggaaataatatgctacgattgtataaa |
24854519 |
T |
|
| Q |
135 |
cagtctgcacaacagcgagaacagagaccaccgttgcaacgaagttgtaattgcggttcaaaaatcttacaacccattcttgac---ggcatgtgaatga |
231 |
Q |
| |
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|||||||||||||| | |||||||| || ||| ||||| ||||||||||| ||||||| |||||||| || ||||| |||| || |||||||||| |
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| T |
24854520 |
cagtctgcacaacaatggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatcttaaaagccatttatgacgatggtatgtgaatga |
24854619 |
T |
|
| Q |
232 |
attccacaccattatcca |
249 |
Q |
| |
|
|||| |||| ||| |||| |
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| T |
24854620 |
attcaacactattttcca |
24854637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 24748238 - 24748314
Alignment:
| Q |
82 |
tcaagcaatggagaggagctatttgggaaaataatacggtaggactgtataaacagtctgcacaacagcgagaacag |
158 |
Q |
| |
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|||||||||||| |||| ||||||||||||| ||| | ||||| || |||||| | |||||||||| |||||||| |
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| T |
24748238 |
tcaagcaatggacaggaattatttgggaaaattataagctaggaatgcataaactatatgcacaacagtgagaacag |
24748314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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