View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11172_low_1 (Length: 554)

Name: NF11172_low_1
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11172_low_1
NF11172_low_1
[»] chr3 (3 HSPs)
chr3 (10-517)||(3398538-3399045)
chr3 (442-517)||(3387117-3387192)
chr3 (430-482)||(16230720-16230772)
[»] scaffold0427 (1 HSPs)
scaffold0427 (185-507)||(4736-5058)
[»] chr8 (2 HSPs)
chr8 (248-517)||(24537307-24537576)
chr8 (425-474)||(26825922-26825971)
[»] chr6 (2 HSPs)
chr6 (346-517)||(24253059-24253230)
chr6 (346-517)||(22566920-22567091)
[»] chr5 (4 HSPs)
chr5 (248-473)||(24317927-24318151)
chr5 (416-482)||(20550084-20550150)
chr5 (431-482)||(24187822-24187873)
chr5 (10-84)||(17430470-17430544)
[»] chr2 (3 HSPs)
chr2 (458-513)||(29652673-29652728)
chr2 (373-419)||(11390304-11390350)
chr2 (373-419)||(11406965-11407011)
[»] scaffold0008 (2 HSPs)
scaffold0008 (417-502)||(233569-233654)
scaffold0008 (16-110)||(233174-233268)


Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 10 - 517
Target Start/End: Complemental strand, 3399045 - 3398538
Alignment:
Q  10 agtgagatgaattcttcctcagatagattagcatttgtctttaagagctcttgaagaaacttgacgcagcatggaatctgttcgaccgtttctgtgattg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3399045 agtgagatgaattcttcctcagatagattagcatttgtctttaagagctcttgaagaaacttgatgcagcatggaatctgttcgaccgtttctgtgattg 3398946  T
Q  110 gcatgttcactttgtatcctttcaaaatatggtgcagagcattgaactttggcggtacttctttttcttcttatgcatcttccgtctgaggtttgtcttc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3398945 gcatgttcactttgtatcctttcaaaatatggtgcagagcattgaactttggcggtacttctttttcttcttatgcatcttccgtctgaggtttgtcttc 3398846  T
Q  210 agccacttctactgcgttaatatgctcatcttccatatcttgttttgacttcaacaactcttatcgctttagatgaatttctttctgaaatgcaaggtat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3398845 agccacttctactgcgttaatatgctcatcttccatatcttgttttgacttcaacaactcttatcgctttagatgaatttctttctgaaatgcaaggtat 3398746  T
Q  310 cctgactcttttcccatcttctccacataggaattcgtcaccttaaccttcttgaataaggagatcaagtgctcctagttctgttcttccatttcctctt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3398745 cctgactcttttcccatcttctccacataggaattcgtcaccttaaccttcttgaataaggagatcaagtgctcctagttctgttcttccatttcctctt 3398646  T
Q  410 tagtttccattgattgtgtacttttggttgattacatgattacctatttcacacaataattgcaagtttgagataatttcctaacgagaataaggttgcg 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  3398645 tagtttccattgattgtgtacttttggttgattacatgattacctatttcacacaataattgcaagtttgagataatttcctaacgagaataaggttgtg 3398546  T
Q  510 attgattt 517  Q
    ||||||||    
T  3398545 attgattt 3398538  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 442 - 517
Target Start/End: Complemental strand, 3387192 - 3387117
Alignment:
Q  442 tacatgattacctatttcacacaataattgcaagtttgagataatttcctaacgagaataaggttgcgattgattt 517  Q
    ||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||||||| |||||||||||    
T  3387192 tacatgattacctatttcacacaataatttcaaattcgagaaaatttcctaacgagaataaggtggcgattgattt 3387117  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 430 - 482
Target Start/End: Complemental strand, 16230772 - 16230720
Alignment:
Q  430 cttttggttgattacatgattacctatttcacacaataattgcaagtttgaga 482  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||| ||||    
T  16230772 cttttggttgagtccatggttacctatttcacacaataattgcaagttcgaga 16230720  T

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Target: scaffold0427 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 185 - 507
Target Start/End: Complemental strand, 5058 - 4736
Alignment:
Q  185 catcttccgtctgaggtttgtcttcagccacttctactgcgttaatatgctcatcttccatatcttgttttgacttcaacaactcttatcgctttagatg 284  Q
    |||||||||||| |||||| |||||| |||||||||  | ||| || ||||||||||    | ||||| ||||||||||||||||||||||||||| ||     
T  5058 catcttccgtctaaggtttatcttcaaccacttctatcgagttgatctgctcatcttttcgagcttgtgttgacttcaacaactcttatcgctttatatc 4959  T
Q  285 aatttctttctgaaatgcaaggtatcctgactcttttcccatcttctccacataggaattcgtcaccttaaccttcttgaataaggagatcaagtgctcc 384  Q
     | ||||| || |||| | |||||||| ||||||||| ||| |||||||||| | ||| ||||||||||||||||||||||| |||||||||||||||||    
T  4958 tacttcttgctaaaattcgaggtatcccgactctttttccagcttctccacaaaagaagtcgtcaccttaaccttcttgaatgaggagatcaagtgctcc 4859  T
Q  385 tagttctgttcttccatttcctctttagtttccattgattgtgtacttttggttgattacatgattacctatttcacacaataattgcaagtttgagata 484  Q
     | || ||||||||||| |||||||||||   ||||| |||||   |||||||||||| |||| | || |||||||||| ||| ||||||||| |||| |    
T  4858 caattttgttcttccatctcctctttagtagtcattgcttgtgcctttttggttgattccatgctaacatatttcacaccatagttgcaagttcgagaaa 4759  T
Q  485 atttcctaacgagaataaggttg 507  Q
    |||||||||| | | ||||||||    
T  4758 atttcctaacaaaattaaggttg 4736  T

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Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 248 - 517
Target Start/End: Original strand, 24537307 - 24537576
Alignment:
Q  248 cttgttttgacttcaacaactcttatcgctttagatgaatttctttctgaaatgcaaggtatcctgactcttttcccatcttctccacataggaattcgt 347  Q
    |||| |||||||||  |||||||| |||||||| ||  | ||||| ||||||| ||||||| |||| ||||||  ||| |||||||||| | |||   ||    
T  24537307 cttggtttgacttccgcaactcttgtcgctttaaatctacttcttgctgaaattcaaggtaccctggctctttctccaacttctccacaaaagaagaagt 24537406  T
Q  348 caccttaaccttcttgaataaggagatcaagtgctcctag-ttctgttcttccatttcctctttagtttccattgattgtgtacttttggttgattacat 446  Q
    |||||| |||||||||| ||| | |||||  ||||| ||| || || || ||||| ||||||| || |  ||||||| ||||  |||||||||||| |||    
T  24537407 cacctttaccttcttgagtaaagtgatcacttgctc-tagattttgatcctccatctcctcttcagctgtcattgatcgtgtgtttttggttgattccat 24537505  T
Q  447 gattacctatttcacacaataattgcaagtttgagataatttcctaacgagaataaggttgcgattgattt 517  Q
    | ||||||||||||||||||||||||| ||| |||| ||||||||||| | |||||| |||||||||||||    
T  24537506 ggttacctatttcacacaataattgcaggttcgagaaaatttcctaacaataataagtttgcgattgattt 24537576  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 26825971 - 26825922
Alignment:
Q  425 gtgtacttttggttgattacatgattacctatttcacacaataattgcaa 474  Q
    |||| ||||||||||||| |||  ||||||||||||||||||||||||||    
T  26825971 gtgtccttttggttgattccattgttacctatttcacacaataattgcaa 26825922  T

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Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 346 - 517
Target Start/End: Complemental strand, 24253230 - 24253059
Alignment:
Q  346 gtcaccttaaccttcttgaataaggagatcaagtgctcctagttctgttcttccatttcctctttagtttccattgattgtgtacttttggttgattaca 445  Q
    |||||||| |||||||||||||  || |||||||||||| | | ||||||| |  |||||||||| ||| ||||| ||||      |||||||| || ||    
T  24253230 gtcaccttcaccttcttgaatagtgatatcaagtgctcccattcctgttctccagtttcctcttttgttgccattaattgctcgtctttggttgcttcca 24253131  T
Q  446 tgattacctatttcacacaataattgcaagtttgagataatttcctaacgagaataaggttgcgattgattt 517  Q
    ||||||||||||||||||||||||  |||||| |||| ||||||||||| |  ||||||||||| |||||||    
T  24253130 tgattacctatttcacacaataatcacaagttcgagaaaatttcctaacaatgataaggttgcgcttgattt 24253059  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 346 - 517
Target Start/End: Complemental strand, 22567091 - 22566920
Alignment:
Q  346 gtcaccttaaccttcttgaataaggagatcaagtgctcctagttctgttcttccatttcctctttagtttccattgattgtgtacttttggttgattaca 445  Q
    |||||| | |||||||||||||| ||||||||||||||  |||| ||||| ||  |||||||||||||| ||||   |||||    ||| |||| ||       
T  22567091 gtcaccgtcaccttcttgaataatgagatcaagtgctctcagttttgttcctcagtttcctctttagttgccatcacttgtgcgtctttagttgcttctg 22566992  T
Q  446 tgattacctatttcacacaataattgcaagtttgagataatttcctaacgagaataaggttgcgattgattt 517  Q
    ||||||||||||||||||||||||  |||| | |||| ||||||||||| |  ||||||||||  |||||||    
T  22566991 tgattacctatttcacacaataatcacaagctcgagaaaatttcctaacaatgataaggttgctcttgattt 22566920  T

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Target: chr5 (Bit Score: 54; Significance: 9e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 248 - 473
Target Start/End: Complemental strand, 24318151 - 24317927
Alignment:
Q  248 cttgttttgacttcaacaactcttatcgctttagatgaatttctttctgaaatgcaaggtatcctgactcttttcccatcttctccacataggaattcgt 347  Q
    |||||||||| ||||||||||||| |||||||||||  | ||||| ||||||| | |||||||| ||||||||  |||  ||||||||| |  || | ||    
T  24318151 cttgttttgatttcaacaactcttgtcgctttagatctacttcttgctgaaattcgaggtatcccgactctttctccagattctccacaaaacaactagt 24318052  T
Q  348 caccttaaccttcttgaataaggagatcaagtgctcctagttctgttcttccatttcctctttagtttccattgattgtgtacttttggttgattacatg 447  Q
     |||||||||||||| | |||   |||||  ||||||   || ||||||||    |||| || |||| ||||||||| ||| ||||||||||||| ||||    
T  24318051 aaccttaaccttctttagtaaattgatcagttgctccagattatgttcttctgagtccttttaagttgccattgattatgtgcttttggttgattccatg 24317952  T
Q  448 attacctatttcacacaataattgca 473  Q
     |||||| ||||||||||||||||||    
T  24317951 gttacct-tttcacacaataattgca 24317927  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 416 - 482
Target Start/End: Complemental strand, 20550150 - 20550084
Alignment:
Q  416 ccattgattgtgtacttttggttgattacatgattacctatttcacacaataattgcaagtttgaga 482  Q
    |||||| || ||| ||||||||||| | |||| ||||||||||||||||||||||| ||||| ||||    
T  20550150 ccattgtttatgtgcttttggttgagtccatggttacctatttcacacaataattgtaagttcgaga 20550084  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 24187873 - 24187822
Alignment:
Q  431 ttttggttgattacatgattacctatttcacacaataattgcaagtttgaga 482  Q
    ||||||||||||  ||| |||||||||||||||||||||| |||||| ||||    
T  24187873 ttttggttgattcaatggttacctatttcacacaataatttcaagttcgaga 24187822  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 17430470 - 17430544
Alignment:
Q  10 agtgagatgaattcttcctcagatagattagcatttgtctttaagagctcttgaagaaacttgacgcagcatgga 84  Q
    ||||| |||| ||||||||| |||||||  |||||  |||| || || |||||||||||||||| ||||||||||    
T  17430470 agtgatatgagttcttcctcggatagatcggcattaatcttcaatagttcttgaagaaacttgatgcagcatgga 17430544  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 458 - 513
Target Start/End: Complemental strand, 29652728 - 29652673
Alignment:
Q  458 tcacacaataattgcaagtttgagataatttcctaacgagaataaggttgcgattg 513  Q
    |||||||||||||||||||| |||| ||||||||||| |||||| |||||||||||    
T  29652728 tcacacaataattgcaagttcgagaaaatttcctaacaagaatatggttgcgattg 29652673  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 11390304 - 11390350
Alignment:
Q  373 atcaagtgctcctagttctgttcttccatttcctctttagtttccat 419  Q
    |||||||||||| ||||||||||||| |||||||| |||||| ||||    
T  11390304 atcaagtgctcccagttctgttcttcaatttcctcgttagttgccat 11390350  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 373 - 419
Target Start/End: Original strand, 11406965 - 11407011
Alignment:
Q  373 atcaagtgctcctagttctgttcttccatttcctctttagtttccat 419  Q
    |||||||||||| ||||||||||||| |||||||| |||||| ||||    
T  11406965 atcaagtgctcccagttctgttcttcaatttcctcgttagttgccat 11407011  T

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Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 417 - 502
Target Start/End: Original strand, 233569 - 233654
Alignment:
Q  417 cattgattgtgtacttttggttgattacatgattacctatttcacacaataattgcaagtttgagataatttcctaacgagaataa 502  Q
    ||||| |||||| ||||| ||| | | ||||||||||||||||| |||||||||||||||| |||| || || ||||| |||||||    
T  233569 cattgtttgtgtgcttttagttcagtccatgattacctatttcagacaataattgcaagttcgagaaaaatttctaacaagaataa 233654  T

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Target: scaffold0008; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 233174 - 233268
Alignment:
Q  16 atgaattcttcctcagatagattagcatttgtctttaagagctcttgaagaaacttgacgcagcatggaatctgttcgaccgtttctgtgattgg 110  Q
    |||| ||||||||| |||||||| ||||  ||||| || |  |||||||||||||||| ||| |||||| | ||| ||||| ||||| |||||||    
T  233174 atgagttcttcctccgatagattggcatcagtcttcaataattcttgaagaaacttgatgcaacatggactttgtgcgaccatttctttgattgg 233268  T

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