View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_low_12 (Length: 274)
Name: NF11172_low_12
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_low_12 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 27418600 - 27418873
Alignment:
| Q |
1 |
cttcaactcgtctcgctggaaattgcggattcaacgggatggcacagcagacttggcccgatttttcactcatacttgagtgttttctcttagtgtttta |
100 |
Q |
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| T |
27418600 |
cttcaactcgtctcgctggaaattgcggattcaacgggatggcacagcagacttggcccgatttttcactcatacttgagtgttttctcttagtgtttta |
27418699 |
T |
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| Q |
101 |
tcaataaatttacgcaataaacttatctttttaattttggaattaattcatataattgaacggattgtgatactttaatactgttctatatattagaatt |
200 |
Q |
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| T |
27418700 |
tcaataaatttacgcaataaacttatctttttaattttggaattaattcatataattgaacggattgtgatactttaatactgttctatatattagaatt |
27418799 |
T |
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| Q |
201 |
tcttgagatctggnnnnnnnnnnnnntaattgaagagttgtgataacattctcattgagggaacattttgtttc |
274 |
Q |
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| T |
27418800 |
tcttgagatctggaaaaaactaaaaataattgaagagttgtgataacattatcattgagggaacattttgtttc |
27418873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 27424312 - 27424341
Alignment:
| Q |
245 |
aacattctcattgagggaacattttgtttc |
274 |
Q |
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| T |
27424312 |
aacattctcattgagggaacattttgtttc |
27424341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 274
Target Start/End: Original strand, 27421729 - 27421765
Alignment:
| Q |
238 |
ttgtgataacattctcattgagggaacattttgtttc |
274 |
Q |
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| T |
27421729 |
ttgtcatagcattctcattgagggaacattttgtttc |
27421765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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