View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_low_16 (Length: 249)
Name: NF11172_low_16
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_low_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 37541428 - 37541661
Alignment:
| Q |
16 |
caaaatcaactcattcaaaatcaacgcagaatcaaacacacgcaaatttaaaggatttcaggttcttaattaagacaacaaatatttcaaagtcacctca |
115 |
Q |
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| T |
37541428 |
caaaatcaattcattcaaaatcaacgcaaaatcaaacacacgcaaatttaaaggatttcaggttgttaattaagacaacaaatatttcaaagtcacctca |
37541527 |
T |
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| Q |
116 |
tatgggaggaaggaggattgatgatctgagtctgacactgaggctgaggcatccaggtgaaagtagaagcagcagcagaagagtcagaagccatgaaatc |
215 |
Q |
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| T |
37541528 |
tatgggaggaaggaggattgatgatctgagtctgagactgaggctgaggcatccaggtgaaagtagaagcagcagcagaagagtcagaagccatgaaatc |
37541627 |
T |
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| Q |
216 |
agcagcagaaatagatatatcatcatagccataa |
249 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
37541628 |
agcagcagaaatagatatatcatcatagccataa |
37541661 |
T |
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