View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11172_low_17 (Length: 240)

Name: NF11172_low_17
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11172_low_17
NF11172_low_17
[»] chr4 (38 HSPs)
chr4 (17-217)||(27418917-27419117)
chr4 (21-92)||(27559211-27559282)
chr4 (17-93)||(27567349-27567425)
chr4 (17-94)||(27556348-27556425)
chr4 (17-136)||(27571717-27571837)
chr4 (17-136)||(27411383-27411502)
chr4 (23-94)||(27421900-27421971)
chr4 (17-72)||(27414295-27414350)
chr4 (17-97)||(27507779-27507859)
chr4 (19-97)||(27473988-27474066)
chr4 (17-61)||(27502809-27502853)
chr4 (21-73)||(27563336-27563388)
chr4 (19-62)||(27487079-27487122)
chr4 (19-97)||(27466917-27466995)
chr4 (17-58)||(27424519-27424560)
chr4 (19-80)||(27444777-27444838)
chr4 (26-70)||(27498518-27498562)
chr4 (19-62)||(27460574-27460617)
chr4 (19-62)||(27476783-27476826)
chr4 (19-62)||(27479997-27480040)
chr4 (19-62)||(27502136-27502179)
chr4 (17-72)||(27506792-27506847)
chr4 (26-97)||(27513742-27513813)
chr4 (19-94)||(27526081-27526156)
chr4 (21-91)||(27446245-27446315)
chr4 (19-61)||(27554405-27554447)
chr4 (19-97)||(27557585-27557663)
chr4 (17-62)||(17970393-17970438)
chr4 (21-62)||(27412762-27412803)
chr4 (19-80)||(27431131-27431192)
chr4 (17-62)||(27468328-27468373)
chr4 (17-62)||(27478884-27478929)
chr4 (17-62)||(27485944-27485989)
chr4 (21-62)||(27504020-27504061)
chr4 (23-72)||(27565942-27565991)
chr4 (21-62)||(27585786-27585827)
chr4 (17-62)||(27600647-27600692)
chr4 (17-61)||(27514985-27515029)
[»] chr3 (9 HSPs)
chr3 (17-97)||(50910054-50910134)
chr3 (17-79)||(48840696-48840758)
chr3 (17-97)||(55084880-55084960)
chr3 (17-62)||(38043997-38044042)
chr3 (17-62)||(50911870-50911915)
chr3 (18-97)||(50904758-50904837)
chr3 (17-62)||(38024876-38024921)
chr3 (17-62)||(38028767-38028812)
chr3 (17-62)||(38031328-38031373)
[»] chr2 (1 HSPs)
chr2 (17-62)||(3073663-3073708)


Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 27419117 - 27418917
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgcttaagtgatttgtaaatcatg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27419117 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgcttaagtgatttgtaaatcatg 27419018  T
Q  117 ctaatggagattaagatagannnnnnnnnnnnnnggatacagattgagatagattagttgaggctaatttgctcagatgacaattttttctgttattaat 216  Q
    ||||||||||||||||||||              ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27419017 ctaatggagattaagatagatttttattttttttggatacagattaagatagattagttgaggctaatttgctcagatgacaattttttctgttattaat 27418918  T
Q  217 a 217  Q
    |    
T  27418917 a 27418917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 27559282 - 27559211
Alignment:
Q  21 tttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttct 92  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  27559282 tttggatatgatcatccaatgggtggtctcacaattccttgcagtgaagatgctttcttacaactcacttct 27559211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 27567349 - 27567425
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctc 93  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||    
T  27567349 agaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctc 27567425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 27556425 - 27556348
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcg 94  Q
    ||||||||||||||||||| | ||||||||||| |||||||| ||| ||||||||||||||||||||||| |||||||    
T  27556425 agaatttggatatgatcattctatgggtggtctcacaattccatgcagtgaagatgctttcttacaactctcttctcg 27556348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 27571717 - 27571837
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt-aagtgatttgtaaatcat 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| || ||||  ||| || | || ||||||||||| || |||  | || |||||    
T  27571717 agaatttggatatgatcatccaatgggtggtctcacaattccttgcggcgaggatgaattcctaaatcttacttctcgcttgaattgagctctagatcat 27571816  T
Q  116 gctaatggagattaagataga 136  Q
    ||||||||||||| |||||||    
T  27571817 gctaatggagatttagataga 27571837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 27411502 - 27411383
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgcttaagtgatttgtaaatcatg 116  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||| | || ||||  |||  | | ||||| ||||| || |||||  ||||||||| |    
T  27411502 agaatttggatatgatcatcctatgggtggtctcacaattccttgcagcgaggatgaattccaaaacctcacatctcgtttgagtgaactgtaaatcaag 27411403  T
Q  117 ctaatggagattaagataga 136  Q
    ||||||||||||||||||||    
T  27411402 ctaatggagattaagataga 27411383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 27421971 - 27421900
Alignment:
Q  23 tggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcg 94  Q
    |||||| |||||||||| ||||||||| |||||||||||| |||||||| ||||||||||||||||||||||    
T  27421971 tggatacgatcatccaacgggtggtctcacaattccttgcagtgaagattctttcttacaactcacttctcg 27421900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 27414350 - 27414295
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatg 72  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  27414350 agaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaagatg 27414295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 27507859 - 27507779
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 97  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |  ||||||  ||||||| |  |||||||||||||    
T  27507859 agaatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgctt 27507779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 27473988 - 27474066
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 97  Q
    |||||| |||||||||||||||||||||||| || ||||||||||| ||||| | ||||||| |  |||||||||||||    
T  27473988 aatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcacttctcgctt 27474066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 27502853 - 27502809
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttg 61  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||    
T  27502853 agaatttggatatgaccatccaatgggtggtcttactattccttg 27502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 27563388 - 27563336
Alignment:
Q  21 tttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgc 73  Q
    |||||||||||||||||||||||||| || ||||||||||||  |||||||||    
T  27563388 tttggatatgatcatccaatgggtggcctcacaattccttgcactgaagatgc 27563336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 27487079 - 27487122
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  27487079 aatttgaatatgatcatccaatgggtggtcttactattccttgc 27487122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 27466917 - 27466995
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 97  Q
    |||||| |||||||||||||||||||||||| || ||||||||| | ||||| | ||||||| |  |||||||| ||||    
T  27466917 aatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagctt 27466995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 27424560 - 27424519
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattcc 58  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  27424560 agaatatggatatgatcatccaatgggtggtcttaccattcc 27424519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 27444838 - 27444777
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttctta 80  Q
    |||| |||||||| ||||||||||||||||| |||||||||||| | ||||| | |||||||    
T  27444838 aattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttctta 27444777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 27498518 - 27498562
Alignment:
Q  26 atatgatcatccaatgggtggtcttacaattccttgcggtgaaga 70  Q
    |||||||||||||||||||||||| || ||||||||||| |||||    
T  27498518 atatgatcatccaatgggtggtctcactattccttgcggagaaga 27498562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 27460574 - 27460617
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||| |||||||||||||||||||||||| || |||||||||    
T  27460574 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 27460617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 27476783 - 27476826
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||| |||||||||||||||||||||||| || |||||||||    
T  27476783 aatttgaatatgatcatccaatgggtggtctaactattccttgc 27476826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 27479997 - 27480040
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||| |||||||||||||||||||||||| || |||||||||    
T  27479997 aatttgaatatgatcatccaatgggtggtctcaccattccttgc 27480040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 27502179 - 27502136
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||| |||||||||||||||||||||||| || |||||||||    
T  27502179 aatttgaatatgatcatccaatgggtggtctaactattccttgc 27502136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 27506792 - 27506847
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatg 72  Q
    ||||||||||||||||||||| |||||||| || || |||||||||  ||||||||    
T  27506792 agaatttggatatgatcatcccatgggtggactcaccattccttgcactgaagatg 27506847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 97
Target Start/End: Complemental strand, 27513813 - 27513742
Alignment:
Q  26 atatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 97  Q
    |||||||||||||||||||||||| || ||||||||| | ||||| |  |||||| |  |||||||||||||    
T  27513813 atatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgctt 27513742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 27526156 - 27526081
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcg 94  Q
    |||||| |||||||||||||| ||||||||| || ||||||||| | ||||| | ||||||| |  ||||||||||    
T  27526156 aatttgaatatgatcatccaacgggtggtctcactattccttgcagagaagacgttttcttagagatcacttctcg 27526081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 27446245 - 27446315
Alignment:
Q  21 tttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttc 91  Q
    |||| ||||||||||| ||||| ||||||  | ||||||||| ||||||||| ||||||| ||| ||||||    
T  27446245 tttgaatatgatcatcgaatggatggtctctcgattccttgcagtgaagatgttttcttagaacacacttc 27446315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 27554405 - 27554447
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttg 61  Q
    ||||||||||||||||||||| |||| |||| |||||||||||    
T  27554405 aatttggatatgatcatccaacgggtagtctcacaattccttg 27554447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 27557585 - 27557663
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 97  Q
    |||||| ||||| |||||||||||||||||| || ||||| ||| | ||||||| ||||||| |  ||||||| |||||    
T  27557585 aatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcacttcgcgctt 27557663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 17970393 - 17970438
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||| ||||| ||||||||||||||||| || ||||||||||||    
T  17970393 agaattcggatacgatcatccaatgggtggcctcacaattccttgc 17970438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 27412762 - 27412803
Alignment:
Q  21 tttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||||||||||||||||||||||| || || |||||||||    
T  27412762 tttggatatgatcatccaatgggtggcctcaccattccttgc 27412803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 27431192 - 27431131
Alignment:
Q  19 aatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttctta 80  Q
    ||||||||||||| |||||||  |||||||| |||||||||||| | ||||| | |||||||    
T  27431192 aatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgttttctta 27431131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 27468373 - 27468328
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    ||||||||||||||||||||| |||||||| || || |||||||||    
T  27468373 agaatttggatatgatcatcccatgggtggcctcaccattccttgc 27468328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 27478929 - 27478884
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    ||||||||||||||||||||| |||||||| || || |||||||||    
T  27478929 agaatttggatatgatcatcccatgggtggcctcaccattccttgc 27478884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 27485989 - 27485944
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    ||||||||||||||||||||| |||||||| || || |||||||||    
T  27485989 agaatttggatatgatcatcccatgggtggcctcaccattccttgc 27485944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 27504020 - 27504061
Alignment:
Q  21 tttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||||||||||||||||||||||| || || |||||||||    
T  27504020 tttggatatgatcatccaatgggtggcctcaccattccttgc 27504061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 27565991 - 27565942
Alignment:
Q  23 tggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatg 72  Q
    |||||||||||||||||||||||| || || |||||||| || |||||||    
T  27565991 tggatatgatcatccaatgggtggcctcaccattccttgtggcgaagatg 27565942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 27585786 - 27585827
Alignment:
Q  21 tttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    ||||||||||||||||||||||| ||||| || |||||||||    
T  27585786 tttggatatgatcatccaatgggaggtctcaccattccttgc 27585827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 27600647 - 27600692
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    ||||||||| ||  ||||||||||||||||||| ||||||||||||    
T  27600647 agaatttggttacaatcatccaatgggtggtctcacaattccttgc 27600692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 27514985 - 27515029
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttg 61  Q
    ||||||||||||||||||||| |||||||| || || ||||||||    
T  27514985 agaatttggatatgatcatcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 50910054 - 50910134
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 97  Q
    |||||||||||||||||||||||||||||| || ||||||||||||   |||||||  ||||| ||| | |||||||||||    
T  50910054 agaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgtcttcttgcaaattacttctcgctt 50910134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 48840758 - 48840696
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttctt 79  Q
    |||||||||||||||||||||||||||||| || ||||||||||||   ||||||| ||||||    
T  48840758 agaatttggatatgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctt 48840696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 55084880 - 55084960
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 97  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||   ||||||| |||||| ||  | |||||||||||    
T  55084880 agaatttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctcgctt 55084960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 38043997 - 38044042
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    ||||||||||||||||||||||||||| || || ||||||||||||    
T  38043997 agaatttggatatgatcatccaatgggcggcctcacaattccttgc 38044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 50911915 - 50911870
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||    
T  50911915 agaatttggatatgatcacccaatgggtggcctaacaattccttgc 50911870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 50904837 - 50904758
Alignment:
Q  18 gaatttggatatgatcatccaatgggtggtcttacaattccttgcggtgaagatgctttcttacaactcacttctcgctt 97  Q
    ||||| ||||||||||||||||||||||| || || ||||||||| | ||||| | ||| || ||  |||||||||||||    
T  50904837 gaattcggatatgatcatccaatgggtggcctcaccattccttgcagagaagaggtttttttgcatatcacttctcgctt 50904758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 38024921 - 38024876
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||||||||||||||| ||||||||||| || || |||||||||    
T  38024921 agaatttggatatgatcacccaatgggtggcctcacgattccttgc 38024876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 38028812 - 38028767
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    ||||||||||||||| ||||||||||| || || ||||||||||||    
T  38028812 agaatttggatatgaccatccaatgggcggcctcacaattccttgc 38028767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 38031373 - 38031328
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||||||||||||||| ||||||||||| || || |||||||||    
T  38031373 agaatttggatatgatcacccaatgggtggcctcacgattccttgc 38031328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 3073663 - 3073708
Alignment:
Q  17 agaatttggatatgatcatccaatgggtggtcttacaattccttgc 62  Q
    |||||| ||||| ||||||||||||||||| || ||||||||||||    
T  3073663 agaattcggatacgatcatccaatgggtggcctcacaattccttgc 3073708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University