View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_low_2 (Length: 465)
Name: NF11172_low_2
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_low_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 10 - 465
Target Start/End: Original strand, 9796410 - 9796865
Alignment:
| Q |
10 |
agcagagaggttactaagagaatgaaaatgattaatgggatagagtatacctgaagactttggatcaactgattcttttgagagattgcaaatgtaattt |
109 |
Q |
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| T |
9796410 |
agcagagaggttactaagagaatgaaaatgattaatgggatagagtatacctgaagactttggatcaactgattcttttgagagattgcaaatgtaattt |
9796509 |
T |
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| Q |
110 |
gtcaggtgttgaggtttgtgagtatttctggttgattttctgagagttataggttgatgttcaggtaaggtaatgtcaggtaaagggttaccattcatat |
209 |
Q |
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| T |
9796510 |
gtcaggtgttgaggtttgtgagtatttctggttgattttctgagagttataggttgatgttcaggtaaggtaatgtcaggtaaagggttaccattcatat |
9796609 |
T |
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| Q |
210 |
tattaggagatgaaatatggtcatcaggttcaaatatgatagggttttgacgttgattaggttgattttggattcaggtgcttgagaatgtgattcaagg |
309 |
Q |
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| T |
9796610 |
tattaggagatgaaatatggtcatcaggttcaaatatgatagggttttgacgttgattaggttgattttggattcaggtgcttgagaatgtgattcaagg |
9796709 |
T |
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| Q |
310 |
tcaacataagaaattatgggatgatttgaatgatatgtccagtgaaacggtggatttgagttgtgatagggaatatatgttcatgataggtgtcatgtct |
409 |
Q |
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| T |
9796710 |
tcaacataagaaattatgggatgatttgaatgatatgtccagtgaaacggtggatttgagttgtgatagggaatatatgttcatgataggtgtcatgtct |
9796809 |
T |
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| Q |
410 |
agnnnnnnnntatggatttggtatttaaatcatggagcacagaacctttgacacct |
465 |
Q |
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| T |
9796810 |
agaaaaaaaatatggatttggtatttaaatcatggagcacagaacctttgacacct |
9796865 |
T |
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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 13428700 - 13428772
Alignment:
| Q |
29 |
gaatgaaaatgattaatgggatagagtatacctgaagactttggatcaactgattcttttgagagattgcaaa |
101 |
Q |
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| T |
13428700 |
gaatgaaaatgattaataggataaagtatacctgaagatgatgaattatttgattctttggagagattgcaaa |
13428772 |
T |
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