View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_low_20 (Length: 219)
Name: NF11172_low_20
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 50082534 - 50082335
Alignment:
| Q |
1 |
ggtatgttaaataatagtatatattattatatgtatggaaatgagacattattttagagatatggtgaaagtgaagttgaaagcctggacctgtctacca |
100 |
Q |
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| T |
50082534 |
ggtatgttaaataatagtatatattattatatgtatggaaatgagacattattttagagatatggtgaaagtgaagttgaaagcctggacctgtctacca |
50082435 |
T |
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| Q |
101 |
aacttatcaagattaataaaaagatggcc--aagactagtaattaggtcggcaaacaaaagtagaaggaagccaaaacaaatatgactgaaattaataca |
198 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50082434 |
aacttatcaagattaa-aaaaagatggccaaaagactagtaattaggtcggcaaacaaaagtagaaggaagccaaaacaaatatgactgaaattaataca |
50082336 |
T |
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