View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_low_3 (Length: 432)
Name: NF11172_low_3
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 1844699 - 1844299
Alignment:
| Q |
1 |
caataatcacaagtaaatttattccaaacagataacttatgcaaaggattttgaagtgagagtagagtatactgaagtgaaagagtaccagtatcttaan |
100 |
Q |
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| T |
1844699 |
caataatcacaagtaaatttattccaaacagataacttatgcaaaggattttgaagtgagagtagagtatactgaagtgaaagagtaccagtatcttaat |
1844600 |
T |
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| Q |
101 |
nnnnnnnacatactatactccaaaggtatcagtttatcaaataaacctgtgtaaacctgagaacatatgttcaaaaagcatatagttgagcatattacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1844599 |
tttttttacatactatactccaaaggtatcagtttatcaaataaacctgtgtaaacctgagaacatatgttcaaaaagcatatagttgagcatattacat |
1844500 |
T |
|
| Q |
201 |
cacnnnnnnnnngtggtttataactataaggttttcatatcagacataactcatccttgcaaaatgagtttgtaagcaaatggatgctactctttaaaaa |
300 |
Q |
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| T |
1844499 |
cacaaaaaaaaagtggtttataactataaggttttcatatcagacataactcatccttgcaaaatgagtttgtaagcaaatggatgctactctttaaaaa |
1844400 |
T |
|
| Q |
301 |
ctcatttcaagccttatctcttttcagtgtggggtttcagttttttccaatacaccctttcacgtccatcactattagacttggtgcgtagatataaatg |
400 |
Q |
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| T |
1844399 |
ctcatttcaagccttatctcttttcagtgtggggtttcagttttttccaatacaccctttcacgtccatcactattagacttggtgcatagatataaatg |
1844300 |
T |
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| Q |
401 |
g |
401 |
Q |
| |
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| |
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| T |
1844299 |
g |
1844299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 1829723 - 1829667
Alignment:
| Q |
31 |
gataacttatgcaaaggattttgaagtgagagtagagtatactgaagtgaaagagta |
87 |
Q |
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| T |
1829723 |
gataacttatgcaaaggattttgaagtcaaaggaaagtatactgaactgaaagagta |
1829667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 387
Target Start/End: Complemental strand, 13744294 - 13744197
Alignment:
| Q |
290 |
ctctttaaaaactcatttcaagccttatctcttttcagtgtggggtttcagttttttccaatacaccctttcacgtccatcactattagacttggtgc |
387 |
Q |
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| T |
13744294 |
ctctttataaactcttttctggccttatctcttttcaatgtgggacttgagttttttccagtacaccctctcacgcccatcgctattggacttggtgc |
13744197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 340 - 389
Target Start/End: Original strand, 26847143 - 26847192
Alignment:
| Q |
340 |
gttttttccaatacaccctttcacgtccatcactattagacttggtgcgt |
389 |
Q |
| |
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| T |
26847143 |
gttttttccaatacaccctttcacgcccagtactattgggcttggtgcgt |
26847192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 401
Target Start/End: Complemental strand, 9496556 - 9496445
Alignment:
| Q |
290 |
ctctttaaaaactcatttcaagccttatctcttttcagtgtggggtttcagttttttccaatacaccctttcacgtccatcactattagacttggtgcgt |
389 |
Q |
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||||||| |||||| | | | ||||||| ||||||| |||||| || |||| | ||||||||||| ||||| ||| ||||||||| |||||||||| |
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| T |
9496556 |
ctctttataaactcttattaggccttatatcttttctatgtgggacttgggtttgtcccaatacaccccctcacgcccaacactattaggcttggtgcgt |
9496457 |
T |
|
| Q |
390 |
agatataaatgg |
401 |
Q |
| |
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| T |
9496456 |
atatataaatgg |
9496445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 333
Target Start/End: Original strand, 56522134 - 56522182
Alignment:
| Q |
285 |
tgctactctttaaaaactcatttcaagccttatctcttttcagtgtggg |
333 |
Q |
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|||||||||||| | ||| |||||||||||||||||||||| |||||| |
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| T |
56522134 |
tgctactctttatacactggtttcaagccttatctcttttcaatgtggg |
56522182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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