View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11172_low_8 (Length: 317)
Name: NF11172_low_8
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11172_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 9 - 317
Target Start/End: Original strand, 8024174 - 8024482
Alignment:
| Q |
9 |
gagatgaagtacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattagactcagcaaaaatagca |
108 |
Q |
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| T |
8024174 |
gagatgaagtacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattaggctcagcaaaaatagca |
8024273 |
T |
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| Q |
109 |
ccaccaaatttaaatcctttggttgttttgactactgctgtgacaggaacattttcctcactcacttgtatccaagctgcataattttaaaccatagtac |
208 |
Q |
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| T |
8024274 |
ccaccaaatttaaatcctttggttgttttgactactgctgtgacaggaacagtttcctcactcacttgtatccaagctgcataattttaaaccatagtac |
8024373 |
T |
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| Q |
209 |
aattgatcatagtcacataatttaagattcatgtatttgatataaacaacaaatttaaagcattaatcctagaatcaatcaaaagtcacctcacattttt |
308 |
Q |
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| T |
8024374 |
aattgatcatagtcacataatttaagattgatgtatttgatataaacaacaaatttaaagcattaatcctgtaatcaatcaaaagtcacctcacattttt |
8024473 |
T |
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| Q |
309 |
aaatagtgt |
317 |
Q |
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||||||||| |
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| T |
8024474 |
aaatagtgt |
8024482 |
T |
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Back To:
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Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 17 - 211
Target Start/End: Original strand, 21544594 - 21544788
Alignment:
| Q |
17 |
gtacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattagactcagcaaaaatagcaccaccaaa |
116 |
Q |
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| T |
21544594 |
gtacctcaaaatagagctcagctacttctgttgcgtccgctgtgagaccacccttaagcatagaccaacaattcggctcagcataaatggcaccaccaaa |
21544693 |
T |
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| Q |
117 |
tttaaatcctttggttgttttgactactgctgtgacaggaacattttcctcactcacttgtatccaagctgcataattttaaaccatagtacaat |
211 |
Q |
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| T |
21544694 |
tttaaatccttcagttgttttgaccattgctgttaccaggacattcgcctcactcacttgtatccaagctgcataattttaacccatagttcaat |
21544788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 28152485 - 28152306
Alignment:
| Q |
15 |
aagtacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattagactcagcaaaaatagcaccacca |
114 |
Q |
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|||||||||||| |||||||||||| | |||| |||||||||||| | ||||||||||||||| |||||||| ||||| || |||||||| |||||| | |
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| T |
28152485 |
aagtacctcaaagtagagctcagcttcccctgatgtatctgctatgaaaccacccttaagcatagaccaacagttagattccgcaaaaatgacaccacaa |
28152386 |
T |
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| Q |
115 |
aatttaaatcctttggttgttttgactactgctgtgacaggaacattttcctcactcacttgtatccaagctgcataatt |
194 |
Q |
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| T |
28152385 |
aatttaaatccttcatttgttttaactactgctgttacaggaacatttccattactcacttgtaaccaagctgcacaatt |
28152306 |
T |
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