View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11172_low_9 (Length: 317)

Name: NF11172_low_9
Description: NF11172
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11172_low_9
NF11172_low_9
[»] chr1 (1 HSPs)
chr1 (1-317)||(50082564-50082877)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 50082877 - 50082564
Alignment:
Q  1 aagcttacttggggaaaaaggtttatattttatagtccaaaaataaatggtgggtgttgtcttttcttaattgtcctgcaatgttgttggatgatgttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50082877 aagcttacttggggaaaaaggtttatattttatagtccaaaaataaatggtgggtgttgtcttttcttaattgtcctgcaatgttgttggatgatgttca 50082778  T
Q  101 tagtttgtactaatttgacagcatttcctgttgctgctggagacacgtgtatataaggtttgtgtactatcgtacactttgtttattatatttatatatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
T  50082777 tagtttgtactaatttgacagcatttcctgttgctgctggagacacgtgtatataaggtttgtgtactatcgtacactttgtttatta---ttatatatc 50082681  T
Q  201 ctcttttgccttccaaagtaaaaatattttatcacatattaagcataacgcagtccgaaaagatattgatatcttgtatttttctccatgctttcattta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50082680 ctcttttgccttccaaagtaaaaatattttatcacatattaagcataacgcagtccgaaaagatattgatatcttgtatttttctccatgctttcattta 50082581  T
Q  301 ttttagggctagaatgc 317  Q
    |||||||||||||||||    
T  50082580 ttttagggctagaatgc 50082564  T

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