View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11173_high_1 (Length: 682)
Name: NF11173_high_1
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 293 - 672
Target Start/End: Complemental strand, 979233 - 978850
Alignment:
| Q |
293 |
caatcactttatattaatacttgggttctaatactcagagtttt-tcccctgtttacatctcaatttccaaccgaattatgttcctttgagtttattctt |
391 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||||||||||||||| |
|
|
| T |
979233 |
caatcactttatattaatacctgggttctaatactcagagttttatcccctgtttacatctcaatttccaatcgaatcaggttcctttgagtttattctt |
979134 |
T |
|
| Q |
392 |
tggctttcctttttgccttttcttcaccttgacccaagattaatcccctcttcttgatttctgaggtttttcctttgcttttgtttgggtccccctggtg |
491 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
979133 |
tggctttcctttttgccttttcttcaccttgacccaagattaatcttctcttcttgatttttgaggtttttcctttgcttctgtttgggtccacctggtg |
979034 |
T |
|
| Q |
492 |
ctagaatcttttatctcctgggttgttatatgtgtttctttctttcagttgtactctacaagaattattgatttctttatcagagcgtattcaccttttc |
591 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
979033 |
ctagaatcttttatctcctgggttcttatatgtgtctctttctttcagttgtactctacaagaattattgatttctttatcataatgtattcaccttttc |
978934 |
T |
|
| Q |
592 |
tttttctatgtgcttttgtctgttaccctacataaac---cttggtttcttctagatttcatctttctctatattcttctctct |
672 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
978933 |
tttttctctgtgcttttgtctgttaccctacagaaaccttcttggtttcttctagatttcatttttctctatattcttctctct |
978850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 979506 - 979302
Alignment:
| Q |
19 |
atcaagtactaagtttaacgcacatgctaagtattctagataaatt-agtatagatgttacacttaatttaagaaaaaagtacggtttcaaatttagttg |
117 |
Q |
| |
|
||||| ||||||||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
979506 |
atcaaatactaagtttattgcgcatgctaaatattctagataaatttagtatagatgttacacttaatttaagaaaaaagtacggtttcaaatttagttg |
979407 |
T |
|
| Q |
118 |
acagaattgatgcctccttgaactctctccacacctctctttcctcttatcttactttgttatccttccttaatctagttgaaagaaagattctggatag |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
979406 |
acagaattgatgcctccttgaactctctccacac--ctctttcctcttctcttactttgttatccttccttaatctagttgaaagacagattctggatag |
979309 |
T |
|
| Q |
218 |
ttggtac |
224 |
Q |
| |
|
||||||| |
|
|
| T |
979308 |
ttggtac |
979302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 6454925 - 6454970
Alignment:
| Q |
19 |
atcaagtactaagtttaacgcacatgctaagtattctagataaatt |
64 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
6454925 |
atcaagtactaagtttaacgcgtatgctaaatattctagataaatt |
6454970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8677914 - 8677869
Alignment:
| Q |
19 |
atcaagtactaagtttaacgcacatgctaagtattctagataaatt |
64 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8677914 |
atcaagtactaagtttaacgcacatgctaaatattctagataaatt |
8677869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 9984786 - 9984828
Alignment:
| Q |
19 |
atcaagtactaagtttaacgcacatgctaagtattctagataa |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
9984786 |
atcaagtactaagtttaacgcacatgctaactattatagataa |
9984828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 31130974 - 31131013
Alignment:
| Q |
25 |
tactaagtttaacgcacatgctaagtattctagataaatt |
64 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
31130974 |
tactaggtttaacgcacatgctaaatattctagataaatt |
31131013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 26075922 - 26075961
Alignment:
| Q |
25 |
tactaagtttaacgcacatgctaagtattctagataaatt |
64 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
26075922 |
tactaagtttaacgcacatgataaatattctagataaatt |
26075961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 19079006 - 19079046
Alignment:
| Q |
23 |
agtactaagtttaacgcacatgctaagtattctagataaatt |
64 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
19079006 |
agtactaagtt-aacgcacatgctaaatattctagataaatt |
19079046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 19079250 - 19079290
Alignment:
| Q |
23 |
agtactaagtttaacgcacatgctaagtattctagataaatt |
64 |
Q |
| |
|
||||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
19079250 |
agtactaagtt-aacgcacatgctaaatattctagataaatt |
19079290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University