View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_high_11 (Length: 314)
Name: NF11173_high_11
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 53984800 - 53985086
Alignment:
| Q |
12 |
tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984800 |
tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac |
53984899 |
T |
|
| Q |
112 |
gtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatg |
211 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53984900 |
gtgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggactatg |
53984999 |
T |
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| Q |
212 |
ttgaagcacgtctagcatccacttccacttcctgccgcaacttctaacgttatggttgcagaagaatagctccatttgagttagatt |
298 |
Q |
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| T |
53985000 |
ttgaagcacgtctagcatccacttccacttcctgccccaacttctaacgttatggttgcagaagaatagctccatttgagttagatt |
53985086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 53971095 - 53971380
Alignment:
| Q |
12 |
tgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaagac |
111 |
Q |
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||||||||||| || ||||||| ||||||||| | |||||| |||||||||||||||||| ||| || |||| ||||||| |||||| | | |||||| |
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| T |
53971095 |
tgagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaagac |
53971194 |
T |
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| Q |
112 |
gtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggactat |
210 |
Q |
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| T |
53971195 |
atgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggactat |
53971292 |
T |
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| Q |
211 |
gttgaagcacgtctagcatccacttccacttcctgccgcaacttctaacgttatggttgcagaagaatagctccatttgagttagatt |
298 |
Q |
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||| |||||||||||||||||| |||||||| |||| ||| || || | | || | ||||||||||||||||||||| |||||||| |
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| T |
53971293 |
gttagagcacgtctagcatccacctccacttcttgccccaaattttaccctcatagatgcagaagaatagctccattttggttagatt |
53971380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 53059941 - 53059871
Alignment:
| Q |
172 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc |
242 |
Q |
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|||||| ||||||| ||||||||||||| || ||| | || ||||||| |||||||||||| |||||||| |
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| T |
53059941 |
aaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccacatccacttc |
53059871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 53062954 - 53062884
Alignment:
| Q |
172 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc |
242 |
Q |
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|||||| ||||||| ||||||||| ||| || ||||| || ||||||| |||||||||||| |||||||| |
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| T |
53062954 |
aaacctcatgaatgataagatgttaaagctttggactgtgctgaagcatttctagcatccacgtccacttc |
53062884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 37419236 - 37419176
Alignment:
| Q |
182 |
aatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc |
242 |
Q |
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|||| ||||||||||||| || ||||| | |||||||| |||||||||||| |||||||| |
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| T |
37419236 |
aatgataagatgttgaagctttggactgttttgaagcatttctagcatccacgtccacttc |
37419176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 53071964 - 53071908
Alignment:
| Q |
172 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca |
228 |
Q |
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|||||| ||||||| ||||||||||||| || ||||| |||||||||| ||||||| |
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| T |
53071964 |
aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca |
53071908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 6688157 - 6688087
Alignment:
| Q |
172 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccacttc |
242 |
Q |
| |
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|||||| ||||||| ||||||||||||| |||||||| |||||||||| |||| |||||||||||||||| |
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| T |
6688157 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttccacttc |
6688087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 34036358 - 34036289
Alignment:
| Q |
172 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttccactt |
241 |
Q |
| |
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|||||| ||||||| ||||||||||||| |||||||| |||||||||| |||||||||||| ||||||| |
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| T |
34036358 |
aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccacctccactt |
34036289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 16163998 - 16164063
Alignment:
| Q |
173 |
aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttcca |
238 |
Q |
| |
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|||||||||||||| |||||||| ||| ||||| || ||||||||||| |||||||||||| |||| |
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| T |
16163998 |
aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccacctcca |
16164063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
| Q |
172 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtt |
213 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
19935421 |
aaacctgatgaatggtaagattttgaagtttgggacaatgtt |
19935380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
| Q |
172 |
aaacctgatgaatggtaagatgttgaagtttgggactatgtt |
213 |
Q |
| |
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||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
19966560 |
aaacctgatgaatggtaagattttgaagtttgggacaatgtt |
19966519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 241
Target Start/End: Complemental strand, 31014529 - 31014454
Alignment:
| Q |
172 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagc------acgtctagcatccacttccactt |
241 |
Q |
| |
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|||||| ||||||| ||||||||||||| |||||||| ||||||||| || |||||||||||||||||||| |
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| T |
31014529 |
aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagcatttctacttctagcatccacttccactt |
31014454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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