View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_high_2 (Length: 663)
Name: NF11173_high_2
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 16 - 534
Target Start/End: Complemental strand, 44420035 - 44419518
Alignment:
| Q |
16 |
acatcaggactcgagaaccaaatcaactactagaaatatgacggacttgtcgatttattcactagatgtaccaaaattgaataacctacatctttatacc |
115 |
Q |
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| T |
44420035 |
acatcaggactcgagaaccaaatcaactactagaaatatgacggacttgtcgatttattcactagatgtaccaaaattgaataacctacatctttatacc |
44419936 |
T |
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| Q |
116 |
ataaatttatgcatgcatgctaaattttcatgagtgaaacatctaaaaagaacattgaaaatgaaataccaagcgtggtgttatatcgcctgatctgtaa |
215 |
Q |
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| T |
44419935 |
ataaatttatgcatgcatgctaaattttcatgagtgaaacatctaaaaagaacattgaaaatgaaataccaagcgtggtgttatatcgcctgatctgtaa |
44419836 |
T |
|
| Q |
216 |
gctttggaataatccattattgtccagcgacagaaaggatttgttccatttggnnnnnnnccaacagatataggcaagcaatctattgcatgttgaactt |
315 |
Q |
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| T |
44419835 |
gctttggaataatccattattgtccagcgacagaaaggatttgttccatttggtttttttccaacagatataggcaagcaatctattgcatgttgaactt |
44419736 |
T |
|
| Q |
316 |
tctcaggtggagatgaagaaggatctatgaatttcacatctttttcttcaatgtctgcaacaataaactcaaatcattttgtctactttcttaaggtaaa |
415 |
Q |
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| T |
44419735 |
tctcaggtggagatgaagaaggatctatgaatttcacatctttttcttcaatgtctgcaacaataaactcaaatca-tttgtctactttcttaaggtaaa |
44419637 |
T |
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| Q |
416 |
tatccttcactcaaataatgtttatttatgaccataaattaatctccctcaaaccttcaaaatcatgtaatggaacatacagaggtgactcttctagttc |
515 |
Q |
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| T |
44419636 |
tatccttcactcaaataatgtttatttatgaccataaattaatctccctcaaaccttcaaaatcatgtaatggaacatacagaggtgactcttctagttc |
44419537 |
T |
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| Q |
516 |
tgcatttgtaataagctgc |
534 |
Q |
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| T |
44419536 |
tgcatttgtaataagctgc |
44419518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 562 - 660
Target Start/End: Complemental strand, 44419490 - 44419391
Alignment:
| Q |
562 |
gcacttgttatatgttgtataatgtcgtggattcatg-aacctagtgtatacgacctcatgaataagannnnnnnngagcaaaatgttcaacaatatggt |
660 |
Q |
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| T |
44419490 |
gcactagttatatgttgtataatgtcgtgtattcatgaaaccaagtgtatactacctcatgaataagattttttttgagcaaaatgtacaacaatatggt |
44419391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 465 - 528
Target Start/End: Complemental strand, 39558635 - 39558572
Alignment:
| Q |
465 |
caaaccttcaaaatcatgtaatggaacatacagaggtgactcttctagttctgcatttgtaata |
528 |
Q |
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| T |
39558635 |
caaaccttcaaaatgatgtaatggaacataaagaggtggctcttctatatctgcatttgtaata |
39558572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 39558988 - 39558927
Alignment:
| Q |
180 |
aataccaagcgtggtgttatatcgcctgatctgtaagctttggaataatccattattgtcca |
241 |
Q |
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| T |
39558988 |
aataccatgtgtggtgttatatctcctgagctgtaagctctgaaatagtccattatggtcca |
39558927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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