View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_high_20 (Length: 213)
Name: NF11173_high_20
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 45 - 200
Target Start/End: Original strand, 21586196 - 21586348
Alignment:
| Q |
45 |
ataaatatttcaagacaactataataacattaatagtaagagaatataaatggatgtatttaattggatacaacttaagtttggggcaccctcccaccat |
144 |
Q |
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| T |
21586196 |
ataaatatttcaagacaactataataacattaatagtaagagaatataaatggatgtatttaattggatacaacttaagtttggggcaccctcccaccat |
21586295 |
T |
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| Q |
145 |
tatttaaatcaaaacaactttcaccccaatttatcttgaatgcataatcctatgct |
200 |
Q |
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| T |
21586296 |
tatttaaatcaaaacaactttcaccccaat---tcttgaatgcataatcctatgct |
21586348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 21593404 - 21593570
Alignment:
| Q |
31 |
tatcataacaagaaataaatatttcaa-gacaactataataacattaatagtaagagaatataaatggatgtatttaattggatacaacttaagtttggg |
129 |
Q |
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| T |
21593404 |
tatcataacaagaaataaataattcaaagacaactatagtaacattaatagtaagagaatataatttgatttatttaattagatacaac-tctgtgaggg |
21593502 |
T |
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| Q |
130 |
gcaccctcccaccattatttaaatcaaaacaactttcaccccaatttatcttgaatgcataatcctatgct |
200 |
Q |
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| T |
21593503 |
gtaccctctcaccattatttaattcaaaacaactttcaccccaat---tcttgaatgcgtaatcctatgct |
21593570 |
T |
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