View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_low_10 (Length: 333)
Name: NF11173_low_10
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 47199120 - 47198939
Alignment:
| Q |
4 |
ggaggagcacagattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
103 |
Q |
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| T |
47199120 |
ggaggaacactgattcaagaagtttttgtagctcaatgaaaatacctctcctaaaagttacaaaagtggatctcaaatgaagaattccaaatgaaatatt |
47199021 |
T |
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| Q |
104 |
tcatttataataattgaagaagtacaatcactgaatgtaatgaaaataattatgagcgtaaaagataaatgcttaaactaaa |
185 |
Q |
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| T |
47199020 |
tcatttataataatggaagaagtacaataactgaatgtaatgaaaataattatgagcgtaaaagataaatggttaagctaaa |
47198939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 215 - 333
Target Start/End: Complemental strand, 47198946 - 47198825
Alignment:
| Q |
215 |
aagctaaatggcaaggatctattataatccactaaagatccttttctaattt-aaagattgcaaagtaata---cttctaactcacttatttcaatgtaa |
310 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
47198946 |
aagctaaatggcaaggatctattataatctactaaagatccttttctaatttaaaagattgc-aagtaatacttcttctaactcacttatttcaatgtaa |
47198848 |
T |
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| Q |
311 |
ctttaaattcaatgcataaacct |
333 |
Q |
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| T |
47198847 |
ctttaaattcaatgcataaacct |
47198825 |
T |
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