View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_low_12 (Length: 273)
Name: NF11173_low_12
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 28491624 - 28491361
Alignment:
| Q |
1 |
ctcatggctcagtggtatatgtggcttttggtagcgaagcaacaccgagtcaagaagaagtcaatgagatagctttaggattggagaagtcgaatcttcc |
100 |
Q |
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| T |
28491624 |
ctcatggctcagtggtatatgtggcttttggtagcgaagcaacaccgagtcaagaagaagtcaatgagatagctttaggattggagaagtcgaatcttcc |
28491525 |
T |
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| Q |
101 |
attcttttgggtccttagggctcaacatgggcgtaaagacaaggcggtgttacaattgccggaaggatttgaggatcgcaccaaagggcgcggagttgta |
200 |
Q |
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| T |
28491524 |
attcttttgggtccttagggctcaacatgggcgtaaagacaaggcggtgttacaattgccggaaggatttgaggatcgcaccaaagggcgcggagttgta |
28491425 |
T |
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| Q |
201 |
tgcactgattgggctccgcaaatgaagatattagggcacatggcaattggtgtgttcttctctc |
264 |
Q |
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| T |
28491424 |
tgcactgattgggctccgcaaatgaagatattagggcacatggcaattggtgtgttcttttctc |
28491361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 28507487 - 28507238
Alignment:
| Q |
3 |
catggctcagtggtatatgtggcttttggtagcgaagcaacaccgagtcaagaagaagtcaatgagatagctttaggattggagaagtcgaatcttccat |
102 |
Q |
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| T |
28507487 |
catggcacagtggtatatgtagcttttggtagtgaagcaaaaccaagtcaagaagaagtgaatgagatagctttagggttagagaagtcaaaccttccat |
28507388 |
T |
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| Q |
103 |
tcttttgggtccttagggctcaacatgggcgtaaagacaaggcggtgttacaattgccggaaggatttgaggatcgcaccaaagggcgcggagttgtatg |
202 |
Q |
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| T |
28507387 |
tcttttgggtccttaaggttcgacgtgggcctacagataaagttgtgttgcaattgccagaaggatttgaggagcggaccaaaggacgtggagtggtatg |
28507288 |
T |
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| Q |
203 |
cactgattgggctccgcaaatgaagatattagggcacatggcaattggtg |
252 |
Q |
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| T |
28507287 |
cactgattgggtcccacaaatgaagatattaggtcacatggcagttggtg |
28507238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 4 - 252
Target Start/End: Complemental strand, 28494940 - 28494692
Alignment:
| Q |
4 |
atggctcagtggtatatgtggcttttggtagcgaagcaacaccgagtcaagaagaagtcaatgagatagctttaggattggagaagtcgaatcttccatt |
103 |
Q |
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| T |
28494940 |
atggcacagtggtatatgtggcttttggtagtgaagcaaaaccaagtcaagaagaagtgaatgagatagctttagggttggagaagtcaaaccttccatt |
28494841 |
T |
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| Q |
104 |
cttttgggtccttagggctcaacatgggcgtaaagacaaggcggtgttacaattgccggaaggatttgaggatcgcaccaaagggcgcggagttgtatgc |
203 |
Q |
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| T |
28494840 |
cttttgggtccttagggtacgacgtgggcctacagataaggttgtgttgcagttgccagaagggtttgaagaacgaaccaaagtacgtggagtggtatgc |
28494741 |
T |
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| Q |
204 |
actgattgggctccgcaaatgaagatattagggcacatggcaattggtg |
252 |
Q |
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| T |
28494740 |
actgaatgggccccacaaatgaagatattaagccacgtggcagttggtg |
28494692 |
T |
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