View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_low_15 (Length: 238)
Name: NF11173_low_15
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 1316707 - 1316929
Alignment:
| Q |
1 |
acagacaggaatatggttttgaatacattgctatatgccaaatccttatcgagtaatttaggaaagtatttattgcaacatgaaagtagttcatggtttt |
100 |
Q |
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| T |
1316707 |
acagacaggaatatggttttgaatacattgctatatgccaaatcctaatcgagtaatttaggaaagtatttattgcaacatgaaagtagttcatggtttt |
1316806 |
T |
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| Q |
101 |
gcctacatatttcatgagtgatgccattgaagatatatctaaagcatgtggagctttggaaatgaaggaagcagctcctccggttgcaggtatcacttat |
200 |
Q |
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| T |
1316807 |
gcctacatatttcatgagtgatgccattgaagatatatctaaagcatgtgcagctttggaaatgaaggaagcagctcctccggttgcaggtatcacttat |
1316906 |
T |
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| Q |
201 |
ctgaatctgaaagttattgtgat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
1316907 |
ctgaatctgaaagttattgtgat |
1316929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 43487057 - 43487167
Alignment:
| Q |
113 |
catgagtgatgccattgaagatatatctaaagcatgtggagctttggaaatgaaggaagcagctcctccggttgcaggtatcacttatctgaatctgaaa |
212 |
Q |
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| T |
43487057 |
catgagtgatgccattgaagatatatctaaagcatgtgcagctttggaaatgaaggaagcagctcctccggttgcaggtatcaattatctgaatctgaaa |
43487156 |
T |
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| Q |
213 |
gttattgtgat |
223 |
Q |
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| T |
43487157 |
gttattgtgat |
43487167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 43486869 - 43486938
Alignment:
| Q |
14 |
tggttttgaatacattgctatatgccaaatccttatcgagtaatttaggaaagtatttattgcaacatga |
83 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| |
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| T |
43486869 |
tggttttgaatacattgctatatgccaaatcctaatagagtaatttaggaaagtattttgtgcaacatga |
43486938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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