View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_low_18 (Length: 224)
Name: NF11173_low_18
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 33483070 - 33482942
Alignment:
| Q |
29 |
acattaacattgtcacaacccaatctcagaccataacctaggcataggctaatctcaactcatcttatatgt---------accctaacacagtaaaaca |
119 |
Q |
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| T |
33483070 |
acatcaacattgtcacaacctaatcacagacaataacctaggcataggctaatttcaactcaacttatatgtagcttaacaatcctaacacagtaaaaca |
33482971 |
T |
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| Q |
120 |
caacacatacaatacaccatcctataaca |
148 |
Q |
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| T |
33482970 |
caacacatacaatacaccatcctataaca |
33482942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 33482944 - 33482905
Alignment:
| Q |
169 |
acatcccaatatgttaattaattatgaagaaagtacataa |
208 |
Q |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
33482944 |
acatccgaatatgttaattaattatgaagaaagtacataa |
33482905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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