View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_low_19 (Length: 222)
Name: NF11173_low_19
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 26715466 - 26715655
Alignment:
| Q |
18 |
attaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtg |
117 |
Q |
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| T |
26715466 |
attaagaagggaaagtgtcgagcgttt-ccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtg |
26715564 |
T |
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| Q |
118 |
aaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtcttcttcat |
208 |
Q |
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| T |
26715565 |
aaccatatggcgaatgaataagcattttcacgtaccggataaaagcctgcggtgaatgtgccttcgggtgagactataacgtcttcttcat |
26715655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 26738705 - 26738883
Alignment:
| Q |
18 |
attaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtg |
117 |
Q |
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| T |
26738705 |
attaagaagggaaagtgtcgagcgttttccgtttactggctgttcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtg |
26738804 |
T |
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| Q |
118 |
aaccatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataa |
196 |
Q |
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| T |
26738805 |
aaccatatggcgaatgaataagcattttcgcctacaggataaaagcccgcggtgaatgtgcctttgggtgagacaataa |
26738883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 22 - 196
Target Start/End: Original strand, 26745744 - 26745918
Alignment:
| Q |
22 |
agaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaacc |
121 |
Q |
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| T |
26745744 |
agaagggaaagtgttgagcgttttccgttaacaggttggtcacgattagccatccaaacaacggtaggattggaaaggtttttgtgtttttgagtgaacc |
26745843 |
T |
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| Q |
122 |
atatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataa |
196 |
Q |
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| T |
26745844 |
atatggcgaatgaataagcattttcacctacgggataaaaacccgcggtgaatgtgcctttgggtgagactataa |
26745918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 206
Target Start/End: Complemental strand, 26693118 - 26692934
Alignment:
| Q |
22 |
agaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaacc |
121 |
Q |
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| T |
26693118 |
agaagggaaagtcttgagcattttccgttaacaggttggtcacgatttgccatccaaacaacggtagcgttggcgaggtttttgtgtttttgagtgaacc |
26693019 |
T |
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| Q |
122 |
atatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtcttcttc |
206 |
Q |
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| T |
26693018 |
atatggcgaatgaataagcattttcacctacgggataaaaacccgcagtgaatgtgccttttggtgatattataatatcttcttc |
26692934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 26677124 - 26677304
Alignment:
| Q |
22 |
agaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaacc |
121 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | || ||||||||| |||||||||||| |
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| T |
26677124 |
agaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaacagtagcgttgtttagatttttgtgtatttgagtgaacc |
26677223 |
T |
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| Q |
122 |
atatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtctt |
202 |
Q |
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| T |
26677224 |
atatggcaaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtgacattataatgtctt |
26677304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 26688966 - 26688786
Alignment:
| Q |
22 |
agaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaacc |
121 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | || ||||||||| |||||||||||| |
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| T |
26688966 |
agaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccatccaaacaacagtagcgttgtttagatttttgtgtatttgagtgaacc |
26688867 |
T |
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| Q |
122 |
atatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtctt |
202 |
Q |
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||||||| || ||||||||||||||||| || | |||||||||||| || ||||| |||| |||||| | ||||| ||||| |
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| T |
26688866 |
atatggcaaaggaataagcattttcaccgacggaataaaagcctgcggtaaatgtacctttgggtgacattataatgtctt |
26688786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 26700294 - 26700481
Alignment:
| Q |
19 |
ttaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtga |
118 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||| |||| |
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| T |
26700294 |
ttaagaagggaaagtgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtagcgttgttgagatttttgtgtttttgggtga |
26700393 |
T |
|
| Q |
119 |
accatatggcgaatgaataagcattttcacctaccggataaaagcctgcagtgaatgtgccttcgggtgagactataacgtcttcttc |
206 |
Q |
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| T |
26700394 |
accatatagcaaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtgagactataatgtcatcttc |
26700481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 26752687 - 26752810
Alignment:
| Q |
22 |
agaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaacc |
121 |
Q |
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|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||| ||||||| |
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| T |
26752687 |
agaagggaaagtgttgagcgttttccattaactggttggtcacgatttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaacc |
26752786 |
T |
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| Q |
122 |
atatggcgaatgaataagcatttt |
145 |
Q |
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||||||| || ||||||||||||| |
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| T |
26752787 |
atatggcaaaggaataagcatttt |
26752810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 26735450 - 26735521
Alignment:
| Q |
18 |
attaagaagggaaagtgtcgagcgttttccgttaactggttggtcacgatttgccatccaaacaacggtagc |
89 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26735450 |
attaagaagggaaagtgttgagcgttttccattaactggttgatcacgatttgccatccaaacaacggtagc |
26735521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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