View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_low_3 (Length: 640)
Name: NF11173_low_3
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 583; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 583; E-Value: 0
Query Start/End: Original strand, 20 - 631
Target Start/End: Complemental strand, 5523222 - 5522615
Alignment:
| Q |
20 |
agctttctcataatctgattaagcattaaggcacccgtttgcttataattcttgatcttattttggttcttctggatcatcacatgtagctagcattaac |
119 |
Q |
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| T |
5523222 |
agctttctcataatctgattaagcattaaggcacccgtttgcttataattcttgatcttattttggttcctctggatcatcacatgtagctagcattaac |
5523123 |
T |
|
| Q |
120 |
ttcttcttgaagacatacttcttctgcttattcagaaggtattcattcttgtaatgccctagcttatttcatatataacacatcacttgagtcttatcaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5523122 |
ttcttcttgaagacatacttcttctgcttattcagaaggtattcattcttgtaatgccctagcttatttcatatataacacatcacttgagtcttatcaa |
5523023 |
T |
|
| Q |
220 |
tctcagctctagatccatattttctgaagggaagtttcttcttgagttgatatttcattttctacgttctttgaattttccttgatataagtgttagctc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5523022 |
tctcagctctagatccatattttctgaagggaagtttcttcttgagttgatatttcattttctacgttctttgaattttcct----ataagtgttagctc |
5522927 |
T |
|
| Q |
320 |
atctctagcttattcttcgcaaagttattgatctttcggattctccacgagttcaaaattatcgaccacatcaaggtgactctcaaaagctttaaaggaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522926 |
atctctagcttattcttcgcaaagttattgatctttcggattctccacgagttcaaaattatcgaccacatcaaggtgactctcaaaagctttaaaggaa |
5522827 |
T |
|
| Q |
420 |
atcatttttcctttcctaattggtttgtcttcactgagtagaacttcatgagtggtaatcctatcaacattttctattacaaggtttcaatttttagcat |
519 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5522826 |
atcatttttcctttcctaattggtttgtcttcactgagtagaacttcatgagttgtaatcctatgaacattttctattacaaggtttcaatttttagcat |
5522727 |
T |
|
| Q |
520 |
ggtgattgaaatcatacctttctccatcattggtttctcctgagtttcactgagtacttttaatggaagatcttcatctttctccggttgtttctttcta |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5522726 |
ggtgattgaaatcatacctttctccatcattggtttctcctgagtttcactgagtacttttaatggaagatcttcatctttctccggttgtttctttcta |
5522627 |
T |
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| Q |
620 |
tgatcttcatct |
631 |
Q |
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|||||||||||| |
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| T |
5522626 |
tgatcttcatct |
5522615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 419 - 471
Target Start/End: Original strand, 18834155 - 18834207
Alignment:
| Q |
419 |
aatcatttttcctttcctaattggtttgtcttcactgagtagaacttcatgag |
471 |
Q |
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|||||| || |||||| | ||||||||||||||| |||| ||||||||||||| |
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| T |
18834155 |
aatcatcttgcctttcatgattggtttgtcttcaatgagcagaacttcatgag |
18834207 |
T |
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