View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_low_5 (Length: 448)
Name: NF11173_low_5
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Complemental strand, 42087500 - 42087080
Alignment:
| Q |
12 |
agatggacatcaaaaaggatagaacaagaatacagaaaactcaaagatgattatgataatttagcttctaagtttcagtgccttaaggaagagaaagagt |
111 |
Q |
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| T |
42087500 |
agatggaaatcaaaaaggatagaacaagaatacagaaaactcaaagatgaatatgataatttagcttctaagtttcagtgccttaaggaagagaaagagt |
42087401 |
T |
|
| Q |
112 |
ctttgcaatcagaggtaagttggtactttggttcttgcaattatattgtaacataactagagttgtgtctcgataaacagcttaatttaaacgagttcag |
211 |
Q |
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| T |
42087400 |
ctttgcaatcagaggtaagttagtactttggttcttgcaattatattgtaacataactatagttgtgtctcgataaacagtttaatttaaacgagttcag |
42087301 |
T |
|
| Q |
212 |
ctattcgtgaactattcatgctcaactcgcaaaatattcggttaagtttgtttatttatttactcaagcttcgtattaggctcgattaattaaatgagtt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42087300 |
ctattcgtgaactattcatgctcaactcgcaaaatattcggttaagtttgtttatttatttactcaagcttcgtattaggctcgattaattaaatgagtt |
42087201 |
T |
|
| Q |
312 |
gaacttaagcttacccgtgtgattannnnnnncctcgcaggttcagaagctaaattatatggtggagacatctcatgatggaggaagggaagcaaaggaa |
411 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42087200 |
gaacttaagcttaaccgtgtgattttttttttcctcgcaggttcagaagctaagttatatggtggaaacatctcatgatggaggaagggaagcaaaggaa |
42087101 |
T |
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| Q |
412 |
aatagcacagaagatggtggt |
432 |
Q |
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| T |
42087100 |
aatagcacagaagatggtggt |
42087080 |
T |
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