View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11173_low_6 (Length: 428)
Name: NF11173_low_6
Description: NF11173
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11173_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 39263525 - 39263131
Alignment:
| Q |
19 |
tgtttacctgctaggatctcaagaagtgatgattttccagctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattct |
118 |
Q |
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| T |
39263525 |
tgtttacctgctaggatctcaagaagtgatgattttccagctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattct |
39263426 |
T |
|
| Q |
119 |
tgagtacatgcctaactccactgcaacctttttcaacttcttctgtttcttgaccattagtatttactagttgtggagatttgctgaagattttaaaagg |
218 |
Q |
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| T |
39263425 |
tgagtacatgcctaactccactgcaacctttttcaacttcttctgtttcttgaacattagtatttactagttgtggagatttgctgaagattttaaaagg |
39263326 |
T |
|
| Q |
219 |
gtgttctgctttgtttgtgtggattttgtagtttatgccaatggcttcaacctcacagccctgcatcttcatttgttgcaaaggttgttgttttttgatt |
318 |
Q |
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| T |
39263325 |
gtgttctgctttgtttgtgtggattttgtagtttatgccaatgacttcaacctcacagccctgcatcttcatttgttgcaaaggttgttgttttttgatt |
39263226 |
T |
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| Q |
319 |
taaactcnnnnnnnctcactgattcctctactctcttctagttgtcaaacccattatttgattcttttcttctcctctctttgttgttatctctg |
413 |
Q |
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| T |
39263225 |
taaactctttttttctcactgattcctctactctcttctagttgtcaaacccattatttgattcttttcttctcctctctttgttgttacctctg |
39263131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 34 - 139
Target Start/End: Complemental strand, 44067234 - 44067129
Alignment:
| Q |
34 |
atctcaagaagtgatgattttccagctccacttggtccaacaattgctagaatttcccatggtctggcttggaaactcacattcttgagtacatgcctaa |
133 |
Q |
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|||||||| | |||||||||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| | || | |||| |||||| |||||| ||| |
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| T |
44067234 |
atctcaagcaatgatgattttcctgctccacttggcccaacaattgcaagaatttcacatggcttggctatgcaattaacatccttgaggacatgcttaa |
44067135 |
T |
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| Q |
134 |
ctccac |
139 |
Q |
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|||||| |
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| T |
44067134 |
ctccac |
44067129 |
T |
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