View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11174_high_1 (Length: 1076)

Name: NF11174_high_1
Description: NF11174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11174_high_1
NF11174_high_1
[»] chr2 (3 HSPs)
chr2 (8-1061)||(7578152-7579200)
chr2 (329-433)||(190634-190737)
chr2 (333-418)||(3812247-3812331)
[»] chr3 (3 HSPs)
chr3 (88-250)||(10866787-10866941)
chr3 (94-220)||(53752474-53752595)
chr3 (175-220)||(41788559-41788604)
[»] chr5 (3 HSPs)
chr5 (95-246)||(21491275-21491418)
chr5 (95-247)||(34871730-34871874)
chr5 (333-427)||(21183725-21183818)
[»] chr7 (2 HSPs)
chr7 (94-250)||(21256861-21257009)
chr7 (88-170)||(45669530-45669612)
[»] chr6 (2 HSPs)
chr6 (178-250)||(29735062-29735134)
chr6 (338-433)||(28846637-28846731)
[»] chr4 (1 HSPs)
chr4 (333-421)||(37731185-37731272)


Alignment Details
Target: chr2 (Bit Score: 903; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 8 - 1061
Target Start/End: Original strand, 7578152 - 7579200
Alignment:
Q  8 gagcacagatcaccggatgtgaatggtctaatttgaaccaaga---ccttcttttttgtgttcactctctgattctcggagaaagaataatatttgtgtt 104  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||| |||||| | |||||| |||||||||||||||||||||    
T  7578152 gagcacagatcaccggatgtgaatggtctaatttgaaccaagaagacctacttttttgtgttaactctcaggttctcgaagaaagaataatatttgtgtt 7578251  T
Q  105 cttgaagcattttggtggggtccatagatgccacatatgtattaagaacattcttctatttttactccaatactccaatgcaaagaacaatatttgtgtt 204  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||||| | ||    
T  7578252 cttgaagcattttggtggggtccataaatgccacgtatgtattaagaacattcttctatttttact--------ccaatgcaaagaacaatatttatatt 7578343  T
Q  205 cttaacttatattatatggacctataattgaccccacatatttttaataataatatatatgtgactttcttcgcatttgtgctttggctttttatgttct 304  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7578344 cttaacttatattatatggacctataattgacctcacatatttttaataataatatatatgtgactttctttgcatttgtgctttggctttttatgttct 7578443  T
Q  305 gctgttcagtacaaatgcacaaccttttgttatgtagaacatgttcttgtggcgcaaccattctccaccttggatgacatgtggatgttctccaatgctg 404  Q
     ||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7578444 actgttcagtacaaatgcgcaactttttgttatgtagaacatgttcttgtggtgcaaccattctccaccttggatgacatgtggatgttctccaatgctg 7578543  T
Q  405 aaaaaataacaagaacagattttgagtgtccttaaatttgtagaacacatcgttgtagttgctctaagtacgtaaagtctgataaaaatttgttcttttc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  7578544 aaaaaataacaagaacagattttgagtgtccttaaatttgtagaacaaagcgttgtagttgctctaagtacgtaatgtctgataaaaaattgttcttttc 7578643  T
Q  505 ataaatcgaactcagttcttctgaacaattcatcgttgatatagctcaacaaccactcgagtgggagagaggtaaagaattttatttagcatttattcat 604  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7578644 ataaatcgaactcagttcttctgaacaattcatcgttgatatagctcaacaaccacttgagtgggagagaggtaaagaattttatttagcatttattcat 7578743  T
Q  605 taataacttatcaataagtgtgtgtgtattttgttttacaatcaaacatttgtggatcaaacacccatagctataatggtaaaatatttaggaaactcag 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7578744 taataacttatcaataagtgtgtgtgtattttgttttacaatcaaacatttgtggatcaaacacccatagctataatggtaaaatatttaggaaactcag 7578843  T
Q  705 tgattgatgtaaattaaatcacaagaataataaatcgttattttatacctccttactgtggatggatacaagagcttttagttgacctcatagcc-aatc 803  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7578844 tgattgatgt-aattaaatcacaagaataataaatcgttattttatacctccttactgtggatggatacaagagcttttagttgacctcatagccaaatc 7578942  T
Q  804 tagaacctggacaaatattagtgagaaaaggaaacacttgaggtgtcattagaatcaaacaatcaatctataagttgagctaaattaataatatgaacag 903  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  7578943 tagaacctggacaaatattagtgagaaaaggaaacacttgaggtgtcattagaatcaaacaatcaatctataagttgagctaaattaataatatgaacgg 7579042  T
Q  904 ttattaacaattgctccttaggcttctaaaattgctcttggacaccccaaaattacctatttattctaaacagcatgtaaatcgatctaaaaagtgattg 1003  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  7579043 ttattaacaattgctccttaggcttctaaaattgctcttggacaccccaaaattacctatttatcctaaacggcatgtaaatcgatctaaaaagtgattg 7579142  T
Q  1004 gaccgattaaaaaagtgttgaacaacacttaacttggtaggcgagtggcatttaagtg 1061  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7579143 gaccgattaaaaaagtgttgaacaacacttaacttggcaggcgagtggcatttaagtg 7579200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 329 - 433
Target Start/End: Original strand, 190634 - 190737
Alignment:
Q  329 ttttgttatgtagaacatgttcttgtggcgcaaccattctccaccttggatgacatgtggatgttctccaatgctgaaaaaataacaagaacagattttg 428  Q
    ||||||||||||||||  |||||| |||  ||||| |||||||||||| |||||| ||||||||||||||||||| |||||||| ||| ||||| |||||    
T  190634 ttttgttatgtagaaccagttcttatggtacaaccgttctccaccttgaatgacaagtggatgttctccaatgct-aaaaaatatcaaaaacagtttttg 190732  T
Q  429 agtgt 433  Q
     ||||    
T  190733 ggtgt 190737  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 333 - 418
Target Start/End: Complemental strand, 3812331 - 3812247
Alignment:
Q  333 gttatgtagaacatgttcttgtggcgcaaccattctccaccttggatgacatgtggatgttctccaatgctgaaaaaataacaaga 418  Q
    |||||||||||   |||||||||| |||||| |||||||||||  |||||| ||||||||||||||||||| |||| |||||||||    
T  3812331 gttatgtagaattggttcttgtggtgcaaccgttctccaccttaaatgacaagtggatgttctccaatgct-aaaacataacaaga 3812247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 1e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 88 - 250
Target Start/End: Complemental strand, 10866941 - 10866787
Alignment:
Q  88 agaataatatttgtgttcttgaagcattttggtggggtccatagatgccacatatgtattaagaacattcttctatttttactccaatactccaatgcaa 187  Q
    |||| ||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||  ||||||||| ||||        ||||    
T  10866941 agaacaatatttatgttcttgaagcattttggtggggtctaaagatgtcacatatgtattaagaacattctttcatttttacttcaat--------gcaa 10866850  T
Q  188 agaacaatatttgtgttcttaacttatattatatggacctataattgaccccacatattttta 250  Q
    |||||||||||||||||||||||||| |||||| || |||| |||||||||||||||||||||    
T  10866849 agaacaatatttgtgttcttaacttacattatagggtcctacaattgaccccacatattttta 10866787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 220
Target Start/End: Original strand, 53752474 - 53752595
Alignment:
Q  94 atatttgtgttcttgaagcattttggtggggtccata---gatgccacatatgtattaagaacattcttctatttttactccaatactccaatgcaaaga 190  Q
    |||||||| ||||| ||||||||||||||||| || |   | ||||||||||||||||| |||||  ||  |||||||||        ||||||||||||    
T  53752474 atatttgtattcttcaagcattttggtggggttcaaaactgctgccacatatgtattaaaaacatcttttcatttttact--------ccaatgcaaaga 53752565  T
Q  191 acaatatttgtgttcttaacttatattata 220  Q
    ||||||||| ||||||||||||| ||||||    
T  53752566 acaatatttatgttcttaacttacattata 53752595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 41788604 - 41788559
Alignment:
Q  175 tactccaatgcaaagaacaatatttgtgttcttaacttatattata 220  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||||    
T  41788604 tacttcaatgcaaagaacaatatttatgttcttaacttacattata 41788559  T

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Target: chr5 (Bit Score: 75; Significance: 5e-34; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 21491418 - 21491275
Alignment:
Q  95 tatttgtgttcttgaagcattttggtggggtccatagatgccacatatgtattaagaacattcttctatttttactccaatactccaatgcaaagaacaa 194  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||        |||||||||||||||    
T  21491418 tatttgtgttctttaagtattttggtggggtccaaagatgccacgtatgtattaagaacattcttcaatttttactc--------caatgcaaagaacaa 21491327  T
Q  195 tatttgtgttcttaacttatattatatggacctataattgaccccacatatt 246  Q
    ||||||||||||||||||| ||||||  | |||| ||||||| | |||||||    
T  21491326 tatttgtgttcttaacttacattatagagtcctacaattgactctacatatt 21491275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 34871874 - 34871730
Alignment:
Q  95 tatttgtgttcttgaagcattttggtggggtccatagatgccacatatgtattaagaacattcttctatttttactccaatactccaatgcaaagaacaa 194  Q
    ||||| |||| |||||| |||||||||||||| | | ||||||||||| |||||| |||||||||| ||||||||||||||        |||||||||||    
T  34871874 tatttatgtttttgaagtattttggtggggtctaaaaatgccacatatatattaacaacattcttccatttttactccaat--------gcaaagaacaa 34871783  T
Q  195 tatttgtgttcttaacttatattatatggacctataattgaccccacatattt 247  Q
    ||||| ||||||||||||| |||||| || |||| |||||||||||| |||||    
T  34871782 tatttatgttcttaacttacattatagggtcctacaattgaccccacgtattt 34871730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 333 - 427
Target Start/End: Original strand, 21183725 - 21183818
Alignment:
Q  333 gttatgtagaacatgttcttgtggcgcaaccattctccaccttggatgacatgtggatgttctccaatgctgaaaaaataacaagaacagatttt 427  Q
    ||||||||||||  |||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||    
T  21183725 gttatgtagaaccggttcttgtggtgcaaccgttctccaccttggatgacaagtggatgttctccaatgct-aaaaaataacaagaacagttttt 21183818  T

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Target: chr7 (Bit Score: 68; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 21256861 - 21257009
Alignment:
Q  94 atatttgtgttcttgaagcattttggtggggtccatagatgccacatatgtattaagaacattcttctatttttactccaatactccaatgcaaagaaca 193  Q
    |||||| ||||||||||||||||||||| |||||| || |||||||||||||||||||||||  ||  |||||||||||||||        |||||||||    
T  21256861 atatttatgttcttgaagcattttggtgaggtccaaagctgccacatatgtattaagaacatcttttcatttttactccaata--------caaagaaca 21256952  T
Q  194 atatttgtgttcttaacttatattatatggacctataattgaccccacatattttta 250  Q
    |||||| ||||||||||||| |||||| || |||  ||||| |||||||||||||||    
T  21256953 atatttatgttcttaacttacattataaggtccttcaattggccccacatattttta 21257009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 45669612 - 45669530
Alignment:
Q  88 agaataatatttgtgttcttgaagcattttggtggggtccatagatgccacatatgtattaagaacattcttctatttttact 170  Q
    |||| ||||||||||||||||||||||||||||||  |||| ||||||||||||| ||||||||||||| ||| |||||||||    
T  45669612 agaacaatatttgtgttcttgaagcattttggtggaatccaaagatgccacatatatattaagaacatttttccatttttact 45669530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 7e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 29735134 - 29735062
Alignment:
Q  178 tccaatgcaaagaacaatatttgtgttcttaacttatattatatggacctataattgaccccacatattttta 250  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||| ||||||||||||    
T  29735134 tccaatgcaaagtacaatatttgtgttcttaacttacattatatggtcctacaattgacctcacatattttta 29735062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 338 - 433
Target Start/End: Original strand, 28846637 - 28846731
Alignment:
Q  338 gtagaacatgttcttgtggcgcaaccattctccaccttggatgacatgtggatgttctccaatgctgaaaaaataacaagaacagattttgagtgt 433  Q
    |||||||  |||||||||| ||||||||||||||||||||||  || ||||||||||||| |||| ||||||||||||||||||| ||||| ||||    
T  28846637 gtagaaccagttcttgtggtgcaaccattctccaccttggataccaagtggatgttctccgatgc-gaaaaaataacaagaacagtttttgggtgt 28846731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 37731185 - 37731272
Alignment:
Q  333 gttatgtagaacatgttcttgtggcgcaaccattctccaccttggatgacatgtggatgttctccaatgctgaaaaaataacaagaaca 421  Q
    ||||||||||||  |||||||||| |||||  ||||||||||||||||||| ||||||||||||| || || |||||||||||||||||    
T  37731185 gttatgtagaaccggttcttgtggtgcaactgttctccaccttggatgacaagtggatgttctccgatact-aaaaaataacaagaaca 37731272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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