View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11174_high_3 (Length: 406)

Name: NF11174_high_3
Description: NF11174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11174_high_3
NF11174_high_3
[»] chr7 (21 HSPs)
chr7 (1-242)||(36670427-36670666)
chr7 (7-143)||(27169005-27169141)
chr7 (317-390)||(36670279-36670352)
chr7 (26-150)||(32019835-32019959)
chr7 (5-149)||(32020445-32020590)
chr7 (5-149)||(39831567-39831712)
chr7 (319-389)||(11511135-11511205)
chr7 (317-390)||(32021041-32021114)
chr7 (317-390)||(39831040-39831113)
chr7 (317-390)||(39832133-39832206)
chr7 (320-390)||(2396205-2396275)
chr7 (7-149)||(2396584-2396720)
chr7 (318-390)||(27168591-27168663)
chr7 (317-386)||(11511949-11512018)
chr7 (325-389)||(27169362-27169426)
chr7 (323-390)||(36670971-36671038)
chr7 (5-62)||(11511461-11511518)
chr7 (322-390)||(32019435-32019503)
chr7 (319-390)||(20343236-20343307)
chr7 (320-390)||(2397117-2397187)
chr7 (317-363)||(32020092-32020138)
[»] chr4 (34 HSPs)
chr4 (1-243)||(38941329-38941570)
chr4 (5-126)||(1950489-1950610)
chr4 (26-150)||(6945254-6945376)
chr4 (317-390)||(38941183-38941256)
chr4 (5-149)||(6945878-6946023)
chr4 (317-390)||(26043812-26043885)
chr4 (317-390)||(56162332-56162405)
chr4 (319-390)||(31690172-31690243)
chr4 (7-149)||(56163606-56163741)
chr4 (317-390)||(5044923-5044996)
chr4 (317-390)||(38941900-38941973)
chr4 (317-390)||(56164054-56164127)
chr4 (317-389)||(22339981-22340053)
chr4 (319-390)||(5045780-5045851)
chr4 (71-148)||(55903033-55903111)
chr4 (317-390)||(6945516-6945589)
chr4 (73-149)||(26044350-26044427)
chr4 (319-390)||(37003035-37003106)
chr4 (320-390)||(22341476-22341546)
chr4 (317-390)||(1950009-1950082)
chr4 (317-390)||(1953402-1953475)
chr4 (5-99)||(26044449-26044543)
chr4 (317-390)||(26044941-26045014)
chr4 (317-379)||(8683670-8683732)
chr4 (322-390)||(6944825-6944893)
chr4 (320-370)||(55903189-55903239)
chr4 (333-390)||(6946444-6946501)
chr4 (317-390)||(8113354-8113427)
chr4 (88-133)||(24837828-24837873)
chr4 (5-61)||(31689855-31689911)
chr4 (317-379)||(13265611-13265680)
chr4 (75-130)||(24758482-24758537)
chr4 (5-62)||(5045452-5045509)
chr4 (103-150)||(31689945-31689993)
[»] chr8 (24 HSPs)
chr8 (1-243)||(10296262-10296504)
chr8 (7-149)||(37732337-37732480)
chr8 (29-150)||(18607374-18607495)
chr8 (7-146)||(35352115-35352253)
chr8 (5-149)||(18195856-18196001)
chr8 (317-390)||(3207197-3207270)
chr8 (317-390)||(35352309-35352382)
chr8 (317-389)||(37732053-37732125)
chr8 (317-390)||(10296115-10296188)
chr8 (317-390)||(14396555-14396628)
chr8 (319-390)||(41826735-41826806)
chr8 (320-390)||(18195325-18195395)
chr8 (317-390)||(3206560-3206633)
chr8 (317-390)||(18607609-18607682)
chr8 (317-390)||(9012040-9012113)
chr8 (317-390)||(10296832-10296905)
chr8 (319-390)||(14395224-14395295)
chr8 (5-62)||(14396046-14396103)
chr8 (317-390)||(23899000-23899073)
chr8 (317-390)||(39137963-39138036)
chr8 (325-390)||(35351660-35351725)
chr8 (318-390)||(14655913-14655985)
chr8 (321-354)||(39482246-39482279)
chr8 (322-370)||(18606959-18607007)
[»] chr1 (33 HSPs)
chr1 (5-148)||(50007168-50007312)
chr1 (5-149)||(8851013-8851158)
chr1 (26-150)||(10844875-10844999)
chr1 (26-150)||(16518788-16518912)
chr1 (5-149)||(22373894-22374039)
chr1 (5-149)||(10846040-10846185)
chr1 (7-149)||(35575359-35575493)
chr1 (71-149)||(42023761-42023840)
chr1 (317-390)||(35575884-35575957)
chr1 (317-390)||(8851600-8851673)
chr1 (317-390)||(10845548-10845621)
chr1 (317-390)||(16518578-16518651)
chr1 (317-390)||(35574964-35575037)
chr1 (318-390)||(5495487-5495559)
chr1 (318-390)||(8850546-8850618)
chr1 (319-390)||(5496340-5496411)
chr1 (317-390)||(2483204-2483277)
chr1 (317-390)||(10844663-10844736)
chr1 (317-390)||(20567953-20568026)
chr1 (317-390)||(22373364-22373437)
chr1 (317-390)||(22374452-22374525)
chr1 (317-390)||(50006650-50006723)
chr1 (317-390)||(10846630-10846704)
chr1 (5-150)||(5496019-5496157)
chr1 (322-381)||(8549727-8549786)
chr1 (320-389)||(42024049-42024119)
chr1 (322-390)||(16519270-16519338)
chr1 (322-390)||(10845355-10845423)
chr1 (317-350)||(2482717-2482750)
chr1 (317-390)||(50277911-50277984)
chr1 (317-390)||(50289579-50289652)
chr1 (319-381)||(51309091-51309153)
chr1 (333-390)||(48481544-48481601)
[»] chr6 (21 HSPs)
chr6 (8-149)||(25133895-25134037)
chr6 (5-146)||(6023168-6023309)
chr6 (5-149)||(13702327-13702472)
chr6 (5-149)||(16008848-16008993)
chr6 (317-391)||(6022367-6022441)
chr6 (5-146)||(6022498-6022639)
chr6 (317-390)||(13701796-13701869)
chr6 (317-390)||(16008321-16008394)
chr6 (317-390)||(3645629-3645702)
chr6 (317-390)||(25133373-25133446)
chr6 (317-390)||(28564532-28564605)
chr6 (318-390)||(16009414-16009486)
chr6 (7-149)||(3646005-3646141)
chr6 (317-390)||(3646566-3646639)
chr6 (317-390)||(7190922-7190995)
chr6 (317-390)||(13220701-13220774)
chr6 (317-390)||(6023364-6023437)
chr6 (317-390)||(7823962-7824035)
chr6 (317-391)||(33707490-33707564)
chr6 (317-354)||(25134452-25134489)
chr6 (317-349)||(13703156-13703188)
[»] chr3 (29 HSPs)
chr3 (26-150)||(49680032-49680156)
chr3 (5-150)||(16913594-16913739)
chr3 (5-150)||(24199771-24199916)
chr3 (5-129)||(43492931-43493055)
chr3 (5-149)||(17343107-17343253)
chr3 (317-390)||(19192200-19192273)
chr3 (317-390)||(5738930-5739003)
chr3 (317-390)||(5776042-5776115)
chr3 (317-390)||(16913809-16913882)
chr3 (317-390)||(17339918-17339991)
chr3 (317-390)||(24199986-24200059)
chr3 (317-390)||(43493523-43493596)
chr3 (1-150)||(44266391-44266534)
chr3 (317-390)||(49680291-49680364)
chr3 (319-390)||(19191416-19191487)
chr3 (317-384)||(54515556-54515623)
chr3 (317-390)||(17195776-17195849)
chr3 (317-390)||(43492287-43492360)
chr3 (317-381)||(14404566-14404630)
chr3 (317-390)||(44266018-44266091)
chr3 (322-390)||(49679629-49679697)
chr3 (320-379)||(14403692-14403751)
chr3 (330-390)||(4524766-4524826)
chr3 (8-62)||(19191708-19191762)
chr3 (318-390)||(5742317-5742390)
chr3 (318-390)||(5779276-5779349)
chr3 (320-385)||(44266859-44266924)
chr3 (317-390)||(24199331-24199407)
chr3 (336-390)||(17343666-17343720)
[»] chr2 (30 HSPs)
chr2 (5-149)||(9260585-9260730)
chr2 (3-149)||(3573969-3574115)
chr2 (7-146)||(20633205-20633343)
chr2 (5-146)||(20633893-20634034)
chr2 (7-149)||(36912078-36912214)
chr2 (317-390)||(2284029-2284102)
chr2 (317-390)||(20634089-20634162)
chr2 (317-390)||(36912607-36912680)
chr2 (317-390)||(20651373-20651446)
chr2 (317-390)||(2284946-2285019)
chr2 (317-390)||(3573587-3573660)
chr2 (317-390)||(23288801-23288874)
chr2 (317-390)||(36150165-36150238)
chr2 (317-390)||(36911680-36911753)
chr2 (7-149)||(2284495-2284631)
chr2 (317-387)||(3574324-3574394)
chr2 (317-390)||(6583109-6583182)
chr2 (317-390)||(20633077-20633150)
chr2 (317-390)||(44531272-44531345)
chr2 (322-390)||(9260068-9260136)
chr2 (317-384)||(44531929-44531996)
chr2 (317-391)||(32705576-32705650)
chr2 (317-390)||(9261127-9261200)
chr2 (317-390)||(20650975-20651048)
chr2 (318-380)||(13105107-13105169)
chr2 (317-367)||(44531815-44531865)
chr2 (318-390)||(13105623-13105695)
chr2 (324-390)||(34239463-34239530)
chr2 (336-390)||(6582573-6582627)
chr2 (317-391)||(7697560-7697636)
[»] chr5 (12 HSPs)
chr5 (5-116)||(25839022-25839133)
chr5 (29-150)||(20339493-20339614)
chr5 (317-390)||(20339682-20339755)
chr5 (317-390)||(25838534-25838607)
chr5 (317-390)||(3389347-3389420)
chr5 (319-390)||(3391003-3391074)
chr5 (317-390)||(19080269-19080342)
chr5 (317-390)||(19080824-19080897)
chr5 (317-390)||(25839546-25839620)
chr5 (5-150)||(3389875-3390013)
chr5 (322-390)||(3636818-3636886)
chr5 (317-368)||(3636546-3636597)
[»] scaffold0039 (3 HSPs)
scaffold0039 (8-133)||(63077-63195)
scaffold0039 (317-390)||(62676-62749)
scaffold0039 (317-390)||(63574-63647)
[»] scaffold0169 (3 HSPs)
scaffold0169 (319-390)||(1415-1486)
scaffold0169 (317-390)||(566-639)
scaffold0169 (5-62)||(1094-1151)
[»] scaffold0008 (2 HSPs)
scaffold0008 (324-388)||(256930-256994)
scaffold0008 (317-390)||(257495-257568)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 9e-86; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 36670666 - 36670427
Alignment:
Q  1 aaatacgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttctt-atataa 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||| ||||||||| || ||||||    
T  36670666 aaatacgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgca-taaaaaataaataaattagtgtattttttttatataa 36670568  T
Q  100 ataacgacaaatcaaaataatcatctccattttattagtttttgttgtcattttttgaagagctcccgatcgtaaaaaaggtatatacataggaaaaaca 199  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36670567 ataacgacaaatcaaaataatcatctccatcttattagtttttgttgtcattttttgaagagctcacgatcgtaaaaaaggtatatacataggaaaaaca 36670468  T
Q  200 tacatctacnnnnnnnggattaaaatgcttattttaccattaa 242  Q
    ||||||||        |||||||||||||||||||||||||||    
T  36670467 tacatcta--aaaaaaggattaaaatgcttattttaccattaa 36670427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 7 - 143
Target Start/End: Original strand, 27169005 - 27169141
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacga 106  Q
    |||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||        ||||||| ||||||||||||||||||||||||||||    
T  27169005 gatagaggaagtaaccctggtctttttttatatccaattcatttacaataattgca-taaaaaataaataagttggtgtattttcttatataaataacga 27169103  T
Q  107 caaatcaaaataatcatctccatt-ttattagtttttg 143  Q
    ||||| |||||||||||||||||| | |||||||||||    
T  27169104 caaattaaaataatcatctccattctaattagtttttg 27169141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 36670352 - 36670279
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36670352 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagtctaccatat 36670279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 32019835 - 32019959
Alignment:
Q  26 gtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatct 125  Q
    |||||||||||||||||||| |||||||||||||| |        ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  32019835 gtcttttcttatatccaattcatttacaataattgta-taagaaataaataaattggtgtattttcttatataaataacgacaaattaaaataattatct 32019933  T
Q  126 ccatttt-attagtttttgttgtcat 150  Q
     |||||| |||||||||||| |||||    
T  32019934 acattttaattagtttttgtggtcat 32019959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 32020445 - 32020590
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||| ||||||||| |||  | |||||||||||| |||| ||||||||||||||||        |||||||||| |||||||||||||||||||||||    
T  32020445 acgataaaggaagtaaccctaatattttcttatatctaattcatttacaataattgcataaaaaaataaataaatttgtgtattttcttatataaataac 32020544  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| |||||||||||||||||  | |||||||||| ||||||    
T  32020545 gacaaattaaaataatcatctccatcgtaattagtttttattgtca 32020590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 39831712 - 39831567
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||| | ||||||| ||| ||||||||||||||| |||| ||||||||||||||||        | |||||||| |||||||||||||||| ||||||    
T  39831712 acgataaatgaagtaaccctagtcttttcttatatctaattcatttacaataattgcataaaaaaattaataaatttgtgtattttcttatatcaataac 39831613  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| ||||||||||||| |||  | |||||||||||||||||    
T  39831612 gacaaattaaaataatcatcttcatcgtaattagtttttgttgtca 39831567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 319 - 389
Target Start/End: Complemental strand, 11511205 - 11511135
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccata 389  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||||||||||||    
T  11511205 catttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctaccata 11511135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 32021041 - 32021114
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||    
T  32021041 gacatttattattttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagcctatcatat 32021114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 39831113 - 39831040
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  39831113 gacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 39831040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 39832133 - 39832206
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||||||| |||||    
T  39832133 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctatcatat 39832206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 2396275 - 2396205
Alignment:
Q  320 atttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  2396275 atttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 2396205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 2396720 - 2396584
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacga 106  Q
    |||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||         ||| ||||||| ||||||||||||||||||| | |    
T  2396720 gatagaggaagtaaccctagtcttttcttatatctaattcatttacaataattgca------taaaaaaaaattgg-gtattttcttatataaatatcaa 2396628  T
Q  107 caaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
     |||| |||||||||||||||||  | |||||||||||||||||    
T  2396627 aaaattaaaataatcatctccatcgtaattagtttttgttgtca 2396584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 27168663 - 27168591
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||| |||||||||||| | ||||||||||||| ||||||||  |||||||||    
T  27168663 acatttattgttttgttattttgtggtgataagtgttgattacaatagaaaatgaaattaaaatctaccatat 27168591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 11511949 - 11512018
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctacc 386  Q
    ||||||||||||||||||||||||| | ||||| |||| |||||||||||||||  ||||||||||||||    
T  11511949 gacatttattgttttgttattttgtggggataaatgttaactacaatagaaaatggaattaaagcctacc 11512018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 27169362 - 27169426
Alignment:
Q  325 ttgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccata 389  Q
    |||||||||||||||||||||||||||||  |||||||||||||||  |||||||| ||||||||    
T  27169362 ttgttttgttattttgtagtgataagtgtagactacaatagaaaatggaattaaagtctaccata 27169426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 36670971 - 36671038
Alignment:
Q  323 tattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||  ||||||||| ||||||||    
T  36670971 tattgttttgttattttgcggtgataagtgttgactacaatagaaaatggaattaaagcataccatat 36671038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 11511518 - 11511461
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgca 62  Q
    |||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||    
T  11511518 acgatagaggaagtaaccctagtcttttcttatatctaattcatttacaataattgca 11511461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 32019503 - 32019435
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||| | ||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  32019503 ttattgttttcttattttatggtgataattgttgactacaatagaaaatggaattaaagcctaccatat 32019435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 20343307 - 20343236
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||| |||||||||||||||||| ||||| | |||| ||| ||| ||| || ||||||||||||||||||||    
T  20343307 cattaattgttttgttattttgtggtgatgaatgttgactccaacagagaagaaaattaaagcctaccatat 20343236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 2397117 - 2397187
Alignment:
Q  320 atttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||| ||||||||||||||  | || ||| ||| ||||||||| ||||| ||||||||||||| |||||    
T  2397117 atttatngttttgttattttgggggganaagngttgactacaatanaaaatgaaattaaagcctatcatat 2397187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 32020092 - 32020138
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaat 363  Q
    |||| |||||||||| ||||||||| |||||||||||| ||||||||    
T  32020092 gacaattattgttttcttattttgtggtgataagtgttgactacaat 32020138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38941570 - 38941329
Alignment:
Q  1 aaatacgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaa 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  38941570 aaatacgatagaggaagtaatcctgatcttttcttatatccaatttatttacaataattgca-taaaaaataaataaattggtgtattttcttatataaa 38941472  T
Q  101 taacgacaaatcaaaataatcatctccatttta-ttagtttttgttgtca-ttttttgaagagctcccgatcgtaaaaaaggtatatacataggaaaaac 198  Q
    ||||||||||| ||||||||||| ||||||||| |||||||||||||||| |||||| ||||||||  |||||||||||| |||||||||||||||||||    
T  38941471 taacgacaaattaaaataatcatgtccattttatttagtttttgttgtcattttttttaagagctcatgatcgtaaaaaaagtatatacataggaaaaac 38941372  T
Q  199 atacatctacnnnnnnnggattaaaatgcttattttaccattaac 243  Q
    |||||||||        ||||||||||||||||||||||||||||    
T  38941371 atacatcta--aaaaaaggattaaaatgcttattttaccattaac 38941329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 1950489 - 1950610
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    ||||||||||||||||||||  |||||||||||||| |||| ||||||||||||||||        |||||||||| |||||||||||||||||||||||    
T  1950489 acgatagaggaagtaatcctattcttttcttatatctaattcatttacaataattgcataaaaaaataaataaatttgtgtattttcttatataaataac 1950588  T
Q  105 gacaaatcaaaataatcatctc 126  Q
    ||||||| ||||||||||||||    
T  1950589 gacaaattaaaataatcatctc 1950610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 6945254 - 6945376
Alignment:
Q  26 gtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatct 125  Q
    |||||||||||||||||||  ||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  6945254 gtcttttcttatatccaat--atttacaataattgca-taaaaaataaataaattggtgtattttcttatataaataacgacaaattaaaacaatcatct 6945350  T
Q  126 ccatttt-attagtttttgttgtcat 150  Q
    ||||||| ||||||||||||||||||    
T  6945351 ccattttaattagtttttgttgtcat 6945376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 38941256 - 38941183
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38941256 gacatttattgttatgttattttgtagtgataagtgttgactacaatagaaaataaaattaaagcctaccatat 38941183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 6946023 - 6945878
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| ||| ||||||||||||||| |||| |||||||| |||||||        |||| ||||| || ||||||||||||||||||||    
T  6946023 acgatagaggaagtaaccctagtcttttcttatatctaattcatttacaaaaattgcataaaaaaataaaaaaatttgtatattttcttatataaataac 6945924  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| |||||||||||||||||  | |||| ||||||||||||    
T  6945923 gacaaattaaaataatcatctccatcgtaattaatttttgttgtca 6945878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 26043885 - 26043812
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||| |||||    
T  26043885 gacatttattgttttgttattttgtagtcataagtgttcactacaatagaaaatggaattaaagcctatcatat 26043812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 56162405 - 56162332
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  56162405 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaattaaattaaagcctatcatat 56162332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 31690172 - 31690243
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||||    
T  31690172 catttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctaccatat 31690243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 56163606 - 56163741
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacga 106  Q
    |||||||||||||| |||  |||||||||||||| |||| ||||||||||||||||         ||| ||||||| |||||||||||||||||||||||    
T  56163606 gatagaggaagtaaccctaatcttttcttatatctaattcatttacaataattgcata-------aaaaaaattgg-gtattttcttatataaataacga 56163697  T
Q  107 caaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
     |||| |||||||||||||||||  | |||||||||||||||||    
T  56163698 gaaattaaaataatcatctccatcgtaattagtttttgttgtca 56163741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 5044996 - 5044923
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  5044996 gacatttattgttttgttattttgtggtgataaatgttaactacaatagaaaatggaattaaagcctaccatat 5044923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 38941900 - 38941973
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||||||||    
T  38941900 gacatttattattttgttattttgcagtgattagtgttgactacaatagaaaatgaaattaaagcctaccatat 38941973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 56164054 - 56164127
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  56164054 gacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 56164127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 22340053 - 22339981
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccata 389  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||  |||||||| ||||||||    
T  22340053 gacatttattgttttgttatcttgtagtgataagtgttgactacaatagaaaatggaattaaagtctaccata 22339981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 5045780 - 5045851
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| |||||||||||| |||| ||||||||||  ||||||||||||||||||    
T  5045780 catttattgttttgttattttgtggtgataagtgttgactataatagaaaatggaattaaagcctaccatat 5045851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 55903033 - 55903111
Alignment:
Q  71 taaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatctccatttta-ttagtttttgttgtc 148  Q
    |||||||||| |||||||||||||||| |||||||| |||| |||||||||||||||||| || |||||||||||||||    
T  55903033 taaataaatttgtgtattttcttatatcaataacgataaattaaaataatcatctccattgtagttagtttttgttgtc 55903111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 6945516 - 6945589
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||| |||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||    
T  6945516 gacaattattgttttcttattttgtggtgataagtgttgactacaatagaaaatagaattaaagtctaccatat 6945589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 26044427 - 26044350
Alignment:
Q  73 aataaattggtgtattttcttatataaataacgacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    |||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||  | |||||||||||||||||    
T  26044427 aataaatttgtgtattttcttatataaataacgataaattaaaataatcatctccatcgtaattagtttttgttgtca 26044350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 37003106 - 37003035
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||| ||||||||| |||||||||||| | |||||||||||||| ||||||| ||||||||||    
T  37003106 catttattgttttattattttgtggtgataagtgttaattacaatagaaaatagaattaaaacctaccatat 37003035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 390
Target Start/End: Original strand, 22341476 - 22341546
Alignment:
Q  320 atttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||  ||||||||||| | ||||||||||||||||||||||  |||||||||    
T  22341476 atttattgttttgttattttgtgatgataagtgttgattacaatagaaaataaaattaaaatctaccatat 22341546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 1950082 - 1950009
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| ||| |||||||||||  |||||||| ||| |||||    
T  1950082 gacatttattgttttgttattttgtggtgataagtgttgactgcaatagaaaatggaattaaagtctatcatat 1950009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 1953402 - 1953475
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||  |||||||| ||| |||||    
T  1953402 gacatttattgtttagttattttgtagtgataagtgttaactacaataaaaaatggaattaaagtctatcatat 1953475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 26044543 - 26044449
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataa 99  Q
    |||||||||||||||| ||| |||||||||| |||| |||| ||||||||||||||||        |||||||||| ||||||||||||||||||    
T  26044543 acgatagaggaagtaaccctagtcttttcttgtatctaattcatttacaataattgcataaaagaataaataaatttgtgtattttcttatataa 26044449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 26044941 - 26045014
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||| ||||||||||||  |||||||||||| |||||||||||||||  |||||||||||| |||||    
T  26044941 gacatttattggtttgttattttgaggtgataagtgttgactacaatagaaaatggaattaaagcctatcatat 26045014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 8683732 - 8683670
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaa 379  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| |||||  |||||||    
T  8683732 gacatttattgttttgttattttgtggtgataagtgttgactacaataaaaaatggaattaaa 8683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 6944893 - 6944825
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||| | ||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  6944893 ttattgttttcttattttatggtgataattgttgactacaatagaaaatggaattaaagcctaccatat 6944825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 370
Target Start/End: Original strand, 55903189 - 55903239
Alignment:
Q  320 atttattgttttgttattttgtagtgataagtgttcactacaatagaaaat 370  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||||||    
T  55903189 atttattgttttgttattttgtgatgataagtgttgactacaatagaaaat 55903239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 6946444 - 6946501
Alignment:
Q  333 ttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||| |||||||||||| |||||||||||||||  |||||||||||| |||||    
T  6946444 ttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctatcatat 6946501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 8113354 - 8113427
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||| |||||||| ||||||||| ||||| |||||| ||| ||||| | ||||||||||||| |||||||||    
T  8113354 gacattcattgttttattattttgtggtgatgagtgttgactccaatatagaataaaattaaagtctaccatat 8113427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 24837828 - 24837873
Alignment:
Q  88 tttcttatataaataacgacaaatcaaaataatcatctccatttta 133  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||    
T  24837828 tttcttatataaataatgacaaattaaaataatcatctccatttta 24837873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 31689855 - 31689911
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgc 61  Q
    ||||||||| |||||| ||| ||||||||||||||| |||| |||||||||||||||    
T  31689855 acgatagagaaagtaaccctagtcttttcttatatctaattcatttacaataattgc 31689911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 13265680 - 13265611
Alignment:
Q  317 gacatttattgttttgttattttgta-------gtgataagtgttcactacaatagaaaataaaattaaa 379  Q
    ||||||||||||||||||||||||||       |||||||||||| ||||||||||||||| ||||||||    
T  13265680 gacatttattgttttgttattttgtactttgtagtgataagtgttaactacaatagaaaattaaattaaa 13265611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 24758482 - 24758537
Alignment:
Q  75 taaattggtgtattttcttatataaataacgacaaatcaaaataatcatctccatt 130  Q
    |||||||||||  |||||||||||||||| ||||||| |||||||| |||| ||||    
T  24758482 taaattggtgttgtttcttatataaataatgacaaattaaaataataatcttcatt 24758537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 5045452 - 5045509
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgca 62  Q
    |||||||||||| ||| |||  |||||||||||||| |||  ||||||||||||||||    
T  5045452 acgatagaggaaataaccctaatcttttcttatatctaatccatttacaataattgca 5045509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 31689945 - 31689993
Alignment:
Q  103 acgacaaatcaaaataatcatctccat-tttattagtttttgttgtcat 150  Q
    ||||||||| |||||||||||||||||  | ||||||||||||||||||    
T  31689945 acgacaaattaaaataatcatctccatcgtaattagtttttgttgtcat 31689993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 10296504 - 10296262
Alignment:
Q  1 aaatacgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaa 100  Q
    ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  10296504 aaatatgatagatgaagtaatcctggtcttttcttatatccaatttatttacaataattgca-taaaaaataaataaattggtgtattttcttatataaa 10296406  T
Q  101 taacgacaaatcaaaataatcatctccatttt-attagtttttgttgtcattttttgaagagctcccgatcgt-aaaaaaggtatatacataggaaaaac 198  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||  |||||| |||||| || ||||||||||||||||    
T  10296405 taacgacaaattaaaataatcatctccgttttaattagtttttgttgtcattttttgaagagctcatgatcgtaaaaaaaagtgtatacataggaaaaac 10296306  T
Q  199 atacatctacnnnnnnnggattaaaatgcttattttaccattaac 243  Q
    |||||||||        ||||||||||||||||||||||||||||    
T  10296305 atacatcta-aaaaaaaggattaaaatgcttattttaccattaac 10296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 37732480 - 37732337
Alignment:
Q  7 gatagaggaagtaatcctggtcttttctt-atatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacg 105  Q
    |||||||||||||| |||| | |||| || |||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  37732480 gatagaggaagtaaccctgattttttttttatatccaattcatttacaataattgca-taaaaaataaataaattggtgtattttcttatataaataacg 37732382  T
Q  106 acaaatcaaaataatcatctccatttt-attagtttttgttgtca 149  Q
    |||||| |||||||||||||||||||| |||||||||||||||||    
T  37732381 acaaattaaaataatcatctccattttaattagtttttgttgtca 37732337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 18607374 - 18607495
Alignment:
Q  29 ttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatctcca 128  Q
    ||||||||||||||||| ||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  18607374 ttttcttatatccaattcatttacaataattgca-taaaaaataaataaataggtgtattttcttatataaataacgacaaattaaaataatcatcttca 18607472  T
Q  129 tttt-attagtttttgttgtcat 150  Q
    |||| ||||||||||||||||||    
T  18607473 ttttaattagtttttgttgtcat 18607495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 35352115 - 35352253
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacga 106  Q
    |||||||||||||| |||| | |||||||||||| |||| ||||||||||||||||        ||||||||||  ||||||||||||||||||||||||    
T  35352115 gatagaggaagtaaccctgatgttttcttatatctaattcatttacaataattgca--taaaaataaataaatttttgtattttcttatataaataacga 35352212  T
Q  107 caaatcaaaataatcatctccatttta-ttagtttttgttg 146  Q
    |||||  ||||||||||||||||| || |||||||||||||    
T  35352213 caaatttaaataatcatctccattgtagttagtttttgttg 35352253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 18196001 - 18195856
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||| | ||||||| ||| ||||||||||||||| |||| ||||||||||||||||        |||||||||| |||||||||||||||||||||||    
T  18196001 acgataaaagaagtaaccctagtcttttcttatatctaattcatttacaataattgcataaaaaaataaataaatttgtgtattttcttatataaataac 18195902  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
     |||||| ||||||||||| | |||  | |||||||||||||||||    
T  18195901 cacaaattaaaataatcattttcatcgtaattagtttttgttgtca 18195856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 3207197 - 3207270
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |||||    
T  3207197 gacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatgaaattaaagtctatcatat 3207270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 35352309 - 35352382
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||    
T  35352309 gacatttattgttttgttattttgtggtgatgagtgttgactacagtagaaaataaaattaaagcctaccatat 35352382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 317 - 389
Target Start/End: Complemental strand, 37732125 - 37732053
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccata 389  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||||||    
T  37732125 gacatttattgttttgttattttgtagtgataagtgttgactataatagaaaatggaattaaagcctaccata 37732053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 10296188 - 10296115
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||  |||||||||    
T  10296188 gacatttattgttttgttattttgtagtgataagtgctgattacaatagaaaataaaattaaactctaccatat 10296115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 14396555 - 14396628
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  14396555 gacatttattgttttgttattttgtggtgataaatgttaactacaatagaaaatggaattaaagcctaccatat 14396628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 41826806 - 41826735
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||||| ||||||||||    
T  41826806 catttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaaacctaccatat 41826735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 320 - 390
Target Start/End: Complemental strand, 18195395 - 18195325
Alignment:
Q  320 atttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||| ||| |||||    
T  18195395 atttattgttttgttattttgtggtgataagtgttaactacaatagaaaatgaaattaaagtctatcatat 18195325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 3206633 - 3206560
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||  |||||||||||| |||||    
T  3206633 gacatttattgttttgttattttgtggtggtaagtgttgactacaatagaaaatggaattaaagcctatcatat 3206560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 18607609 - 18607682
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||| |||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||    
T  18607609 gacaattattgttttcttattttgtggtgataagtgttgactacaatagaaaatagaattaaagtctaccatat 18607682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 9012113 - 9012040
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||  |||||| | || |||||||||||||||  ||||||||||||||||||    
T  9012113 gacatttattgttttgttattttgtgatgataaatattgactacaatagaaaattgaattaaagcctaccatat 9012040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 10296832 - 10296905
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||  || ||||||||| |||||| ||||||||  ||||||||||||||||||    
T  10296832 gacatttattgttttgttattttgcggtaataagtgttgactacagtagaaaatggaattaaagcctaccatat 10296905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 14395295 - 14395224
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||| ||||||||||||||||| |||||||||||| | || ||||||||||  ||||||||||||||||||    
T  14395295 catttgttgttttgttattttgtggtgataagtgttgattagaatagaaaatggaattaaagcctaccatat 14395224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 14396103 - 14396046
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgca 62  Q
    |||||||||||||||| | | ||||||||||||||| |||||||||||||||||||||    
T  14396103 acgatagaggaagtaaccatagtcttttcttatatctaatttatttacaataattgca 14396046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 23899073 - 23899000
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||| |||||||  | |||| |||| ||||||||||| ||| |||||||||||||||||||    
T  23899073 gacatttattgttttgtgattttgtgattataattgttgactacaatagagaatgaaattaaagcctaccatat 23899000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 39137963 - 39138036
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||| |||||||| ||||||||| ||||| |||||| ||| ||||| ||||||||||||||| |||||||||    
T  39137963 gacattaattgttttattattttgtggtgatgagtgttgactccaatataaaataaaattaaagtctaccatat 39138036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 325 - 390
Target Start/End: Complemental strand, 35351725 - 35351660
Alignment:
Q  325 ttgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||  || |||||||| | ||||||| ||||| |||||||||||||||||||    
T  35351725 ttgttttgttattttgtgttgttaagtgttgattacaataaaaaatgaaattaaagcctaccatat 35351660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 14655985 - 14655913
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||| ||||||||||||||||||| ||| |||||||  |||||| |||||||| ||||||||| ||| |||||    
T  14655985 acatatattgttttgttattttgtggtgttaagtgtcgactacagtagaaaatgaaattaaagtctaacatat 14655913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 354
Target Start/End: Original strand, 39482246 - 39482279
Alignment:
Q  321 tttattgttttgttattttgtagtgataagtgtt 354  Q
    ||||||||||||||||||||| ||||||||||||    
T  39482246 tttattgttttgttattttgtggtgataagtgtt 39482279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 370
Target Start/End: Complemental strand, 18607007 - 18606959
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaat 370  Q
    |||||||||| ||||||| | ||||||| |||| |||||||||||||||    
T  18607007 ttattgttttcttattttatggtgataattgttgactacaatagaaaat 18606959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 148
Target Start/End: Complemental strand, 50007312 - 50007168
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||        |||| ||||| |||||||||||||||||||||||    
T  50007312 acgatagaggaagtaaccctagtcttttcttatatctaattcatttacaataattgcataaaaaaataaacaaatttgtgtattttcttatataaataac 50007213  T
Q  105 gacaaatcaaaataatcatctccatt-ttattagtttttgttgtc 148  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||    
T  50007212 gacaaattaaaataatcatctccattgtaattagtttttgttgtc 50007168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 8851013 - 8851158
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||| ||        |||||||||| |||||||||||||||||||||||    
T  8851013 acgatagaggaagtaaccctagtcttttcttatatctaattcatttacaataatttcataaaaaaataaataaatttgtgtattttcttatataaataac 8851112  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||    
T  8851113 gacaaattaaaataatcatctccatcgtaattagtttttgttgtca 8851158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 10844999 - 10844875
Alignment:
Q  26 gtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatct 125  Q
    |||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  10844999 gtcttttcttatatccaattcatttacaataattgca-taaaaaataaataaattggtgtatttttttatataaataacgacaaattaaaataatcatct 10844901  T
Q  126 ccatttt-attagtttttgttgtcat 150  Q
    ||||||| ||||||||||||||||||    
T  10844900 ccattttaattagtttttgttgtcat 10844875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 16518912 - 16518788
Alignment:
Q  26 gtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatct 125  Q
    |||||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||    
T  16518912 gtcttttcttatatccaattcatttacaataattgca-taaaaaataaataaattggtgtattttcttatataaataaagacaaattaaaataatcatct 16518814  T
Q  126 ccatttt-attagtttttgttgtcat 150  Q
    ||||||| ||||||||||||||||||    
T  16518813 ccattttaattagtttttgttgtcat 16518788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 22374039 - 22373894
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| |||  |||||||||||||| |||| ||||||||||||||||        | |||||||| |||||||||||||||||||||||    
T  22374039 acgatagaggaagtaaccctaatcttttcttatatctaattcatttacaataattgcataaaaaaattaataaatttgtgtattttcttatataaataac 22373940  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||    
T  22373939 gacaaattaaaataatcatctccatcgtaattagtttttgttgtca 22373894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 10846040 - 10846185
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||| | ||||||| ||| ||||||||||||||| |||| ||||||||||||||||        |||||||||| |||||||||||||||| ||||||    
T  10846040 acgataaatgaagtaaccctagtcttttcttatatctaattcatttacaataattgcataaataaataaataaatttgtgtattttcttatatcaataac 10846139  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| |||||||||||||||||  | |||||||||||||||||    
T  10846140 gacaaattaaaataatcatctccatcgtaattagtttttgttgtca 10846185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 35575493 - 35575359
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacga 106  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||        |||| ||||||| |||||||||||||||||||||||    
T  35575493 gatagaggaagtaaccctggtcttttcttatatctaattcatttacaataattgca--------taaaaaaattgg-gtattttcttatataaataacga 35575403  T
Q  107 caaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
     |||| |||||||||||||||||  | |||||||||||||||||    
T  35575402 aaaattaaaataatcatctccatcgtaattagtttttgttgtca 35575359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 42023761 - 42023840
Alignment:
Q  71 taaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatctccatttt-attagtttttgttgtca 149  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||    
T  42023761 taaataaattggtgtattttcttatataaataacgacaaattaaaataatcatcttcattttaattagtttttgttgtca 42023840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 35575884 - 35575957
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  35575884 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatgaaattaaagcctatcatat 35575957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 8851600 - 8851673
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||    
T  8851600 gacatttattgtttttttattttgtagtgataagtgttaactacaatagaaaatgaaattaaagcatatcatat 8851673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 10845621 - 10845548
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||||||| |||||    
T  10845621 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctatcatat 10845548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 16518651 - 16518578
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||| |||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  16518651 gacaattattgttttcttattttgtggtgataagtgttgactacaatagaaaatagaattaaagcctaccatat 16518578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 35575037 - 35574964
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  35575037 gacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 35574964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 5495559 - 5495487
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  5495559 acatttattgttttgttattttgtggtgataaatgttaactacaatagaaaatggaattaaagcctaccatat 5495487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 390
Target Start/End: Complemental strand, 8850618 - 8850546
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  8850618 acatttattgttttgttattttgtagtgataagtgttgactacaatagaaaatcgaattaaagtctatcatat 8850546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 5496340 - 5496411
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||||| ||||||||||    
T  5496340 catttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaaacctaccatat 5496411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 2483204 - 2483277
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  2483204 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaattgaattaaagtctatcatat 2483277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 10844736 - 10844663
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||| |||||||||| ||||||||| |||||||||||| |||||||||||||||| |||||||||||| |||||    
T  10844736 gacaattattgttttcttattttgtggtgataagtgttgactacaatagaaaatataattaaagcctatcatat 10844663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 20567953 - 20568026
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||| |||||||||| |||||||||||| ||||| ||||||||| |||||||||| ||||||||    
T  20567953 gacatttattgtttcgttattttgtggtgataagtgttaactacgatagaaaatgaaattaaagcataccatat 20568026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 22373437 - 22373364
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  ||||||||| || |||||    
T  22373437 gacatttattgttttgttattttgtagtgataaatgttaactacaatagaaaatggaattaaagcttatcatat 22373364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 22374452 - 22374525
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||| |||||    
T  22374452 gacatttattgctttgttattttgtggtgataagtgttgactacaatagaaaatataattaaagtctatcatat 22374525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 50006723 - 50006650
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||| |||| |||||    
T  50006723 gacatttattgttttgttattttgtagtgataagtattaactacaatagaaaatgacattaaaccctatcatat 50006650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 10846630 - 10846704
Alignment:
Q  317 gacatttattgt-tttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  10846630 gacatttattgtgtttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 10846704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 5496019 - 5496157
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||        |||||||||| ||||||||  ||||       ||    
T  5496019 acgatagaggaagtaaccctagtctttttttatatctaatttatttacaataattgca-taaaaaataaataaatttgtgtatttatttat-------ac 5496110  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtcat 150  Q
    ||||||| |||||||||||||||||  | ||||||||||||||||||    
T  5496111 gacaaattaaaataatcatctccatcgtaattagtttttgttgtcat 5496157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 381
Target Start/End: Complemental strand, 8549786 - 8549727
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagc 381  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||  |||||||||    
T  8549786 ttattgttttgttattttgtagtgataagtgttgactacaatacaaaatggaattaaagc 8549727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 42024049 - 42024119
Alignment:
Q  320 atttattgttttgttattttgt-agtgataagtgttcactacaatagaaaataaaattaaagcctaccata 389  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||||||||||  |||||||| ||||||||    
T  42024049 atttattattttgttattttgttagtgataagtgttgactacaatagaaaatggaattaaagtctaccata 42024119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 16519270 - 16519338
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||| | ||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  16519270 ttattgttttcttattttatggtgataattgttgactacaatagaaaatggaattaaagcctaccatat 16519338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 10845355 - 10845423
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||| | ||||||| |||| |||||||||||||||  |||||||||| |||||||    
T  10845355 ttattgttttcttattttatggtgataattgttgactacaatagaaaatggaattaaagccaaccatat 10845423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 2482750 - 2482717
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataag 350  Q
    ||||||||||||||||||||||||||||||||||    
T  2482750 gacatttattgttttgttattttgtagtgataag 2482717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 50277911 - 50277984
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||| |||||||| ||||||||  ||||| |||||| ||| ||||| | ||||||||||||| |||||||||    
T  50277911 gacattaattgttttattattttggggtgatgagtgttgactccaatatataataaaattaaagtctaccatat 50277984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 50289579 - 50289652
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||| |||||||| ||||||||  ||||| |||||| ||| ||||| | ||||||||||||| |||||||||    
T  50289579 gacattaattgttttattattttggggtgatgagtgttgactccaatatataataaaattaaagtctaccatat 50289652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 381
Target Start/End: Original strand, 51309091 - 51309153
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagc 381  Q
    |||| |||||||||  |||||| | |||| |||||| ||| ||||||||||||||||||||||    
T  51309091 cattaattgttttgccattttgaaatgatgagtgttaactccaatagaaaataaaattaaagc 51309153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 48481544 - 48481601
Alignment:
Q  333 ttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||| || || |||||| |||| ||||||||||  ||||||||||||||||||    
T  48481544 ttattttgtggtaatgagtgttgactataatagaaaatggaattaaagcctaccatat 48481601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 25134037 - 25133895
Alignment:
Q  8 atagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgac 107  Q
    ||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||        |||||||||| ||||||||||||||||||||||||||    
T  25134037 atagaggaagtaaccctagtcttttcttatatctaattcatttacaataattgcataaaaaaataaataaatttgtgtattttcttatataaataacgac 25133938  T
Q  108 aaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    |||| |||||||||||||||||  | |||||||||||||||||    
T  25133937 aaattaaaataatcatctccatcgtaattagtttttgttgtca 25133895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 6023168 - 6023309
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||        ||||||||||  ||||||||||||||||||||||    
T  6023168 acgatagaggaagtaaccctggtcttttcttatatctaattcatttacaataattgca-taaaaaataaataaatttctgtattttcttatataaataac 6023266  T
Q  105 gacaaatcaaaataatcatctccatttta-ttagtttttgttg 146  Q
    |||||||  ||||||||||||||||| || |||||||||||||    
T  6023267 gacaaatttaaataatcatctccattgtagttagtttttgttg 6023309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 13702472 - 13702327
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||        |||||||||| ||||||||||||||||| |||||    
T  13702472 acgatagaggaagtaaccctagtcttttcttatatctaattcatttacaataattgcataaaaaaataaataaatttgtgtattttcttatatacataac 13702373  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| |||||||||||||||||  | |||| ||||||||||||    
T  13702372 gacaaattaaaataatcatctccatcgtaattaatttttgttgtca 13702327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 16008993 - 16008848
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||| | ||||||| ||| ||||||||||||||| |||| ||||||||||||||||        | |||||||| |||||||||||||||| ||||||    
T  16008993 acgataaatgaagtaaccctagtcttttcttatatctaattcatttacaataattgcataaaaaaattaataaatttgtgtattttcttatatcaataac 16008894  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| ||||||||||||| |||  | |||||||||||||||||    
T  16008893 gacaaattaaaataatcatcttcatcgtaattagtttttgttgtca 16008848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 6022441 - 6022367
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatatt 391  Q
    ||||||||||||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||||||    
T  6022441 gacatttattgttttgttattttgtggtgataagtgttgactacagtagaaaatgaaattaaagcctaccatatt 6022367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 6022639 - 6022498
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    ||||||||||||| || |||||| |||||||||||| |||| ||||||||||||||||        ||||||||||  |||||||||||||| |||||||    
T  6022639 acgatagaggaagaaaccctggtgttttcttatatctaattcatttacaataattgca-taaaaaataaataaatttctgtattttcttatacaaataac 6022541  T
Q  105 gacaaatcaaaataatcatctccatttta-ttagtttttgttg 146  Q
    || ||||  ||||||||||||||||| || ||| |||||||||    
T  6022540 gaaaaatttaaataatcatctccattgtagttactttttgttg 6022498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 13701869 - 13701796
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| || |||||    
T  13701869 gacatttattgtttttttattttgtagtgataagtgttaactacaatagaaaatgaaattaaagcatatcatat 13701796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 16008394 - 16008321
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  16008394 gacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 16008321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 3645702 - 3645629
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  3645702 gacatttattattttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 3645629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 25133446 - 25133373
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| |||||||||| || |||||    
T  25133446 gacatttattgtttttttattttgtagtgataagtgttaactacaaaagaaaatgaaattaaagcatatcatat 25133373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 28564605 - 28564532
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  28564605 gacatttattgttttattattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 28564532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 16009414 - 16009486
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||||| |||| |||||    
T  16009414 acatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaaacctatcatat 16009486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 3646141 - 3646005
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattg-gtgtattttcttatataaataacg 105  Q
    |||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||        |||||   ||  | ||||||||||||||||||||||    
T  3646141 gatagaggaagtaaccctagtcttttcttatatctaattcatttacaataattgca--------taaattttttttgggtattttcttatataaataacg 3646050  T
Q  106 acaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    | |||| |||||||||||||||||  | |||||||||||||||||    
T  3646049 aaaaattaaaataatcatctccatcgtaattagtttttgttgtca 3646005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 3646566 - 3646639
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| || ||||||||| |||||| || ||||| ||||||||||||| |||||    
T  3646566 gacatttattgttttgttattttgtggtaataagtgttgactacagtaaaaaatgaaattaaagcctatcatat 3646639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 7190995 - 7190922
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||| |||||||||  ||||||||||| |||||||||||||||  ||||||||| ||||||||    
T  7190995 gacatttattgttttcttattttgtgatgataagtgttgactacaatagaaaatggaattaaagcataccatat 7190922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 13220701 - 13220774
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||| |||||||||  ||||||||||| |||||||||||||||  ||||||||| ||||||||    
T  13220701 gacatttattgttttcttattttgtgatgataagtgttgactacaatagaaaattgaattaaagcataccatat 13220774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 6023364 - 6023437
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| ||  |||||||| |||| | |||||||| ||||||||||||| |||||    
T  6023364 gacatttattgttttgttattttgtggttgtaagtgttgactatagtagaaaatgaaattaaagcctatcatat 6023437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 7824035 - 7823962
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| |||| ||||||||  |||||||||||| |||||||||||||||  |||||||||||| |||||    
T  7824035 gacatttattattttcttattttgcggtgataagtgttgactacaatagaaaatggaattaaagcctatcatat 7823962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 33707490 - 33707564
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatatt 391  Q
    |||||| |||||||| ||||||||| ||||| |||||| ||| ||||| | ||||||||||||| ||||||||||    
T  33707490 gacattaattgttttattattttgtggtgatgagtgttgactccaatatagaataaaattaaagtctaccatatt 33707564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 25134452 - 25134489
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgtt 354  Q
    ||||||||||||||||||||||||||||||||||||||    
T  25134452 gacatttattgttttgttattttgtagtgataagtgtt 25134489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 13703188 - 13703156
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataa 349  Q
    |||||||||||||||||||||| ||||||||||    
T  13703188 gacatttattgttttgttatttcgtagtgataa 13703156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 26 - 150
Target Start/End: Original strand, 49680032 - 49680156
Alignment:
Q  26 gtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatct 125  Q
    |||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  49680032 gtcttttcttatatccaattcatttacaataattgca-taaaaaataaataaattggtgtatttttttatataaataacgacaaattaaaataatcatct 49680130  T
Q  126 ccatttt-attagtttttgttgtcat 150  Q
    ||||||| ||||||||||||||||||    
T  49680131 ccattttaattagtttttgttgtcat 49680156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 16913594 - 16913739
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||        |||||||||| || ||||||||||||||||||||    
T  16913594 acgatagaggaagtaaccctggtcttttcgtatatctaattcatttacaataattgca-taaaaaataaataaatttgtctattttcttatataaataac 16913692  T
Q  105 gacaaatcaaaataatcatctccatttta-ttagtttttgttgtcat 150  Q
    ||||||| ||||||||||||| |||| || |||||||||||||||||    
T  16913693 gacaaattaaaataatcatcttcattgtagttagtttttgttgtcat 16913739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 24199771 - 24199916
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| |||||||||||| |||||| |||| ||||||||||||||||        |||||||||| || ||||||||||||||||||||    
T  24199771 acgatagaggaagtaaccctggtcttttcgtatatctaattcatttacaataattgca-taaaaaataaataaatttgtctattttcttatataaataac 24199869  T
Q  105 gacaaatcaaaataatcatctccatttta-ttagtttttgttgtcat 150  Q
    ||||||| ||||||||||||| |||| || |||||||||||||||||    
T  24199870 gacaaattaaaataatcatcttcattgtagttagtttttgttgtcat 24199916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 43492931 - 43493055
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    ||||||||||||| ||||||  |||||||||||||| |||| ||||||||||||||||        |||||||||| |||||||||||||||||||||||    
T  43492931 acgatagaggaagcaatcctattcttttcttatatctaattcatttacaataattgcataaaaaaataaataaatttgtgtattttcttatataaataac 43493030  T
Q  105 gacaaatcaaaataatcatctccat 129  Q
    ||||||| |||||||||||||||||    
T  43493031 gacaaattaaaataatcatctccat 43493055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 17343253 - 17343107
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnn-taaataaattggtgtattttcttatataaataa 103  Q
    ||||||||||||| ||||||  |||||||||||||| |||| ||||||||||||||||         |||||||||| ||||||||||||||||||||||    
T  17343253 acgatagaggaagcaatcctattcttttcttatatctaattcatttacaataattgcataaaaataataaataaatttgtgtattttcttatataaataa 17343154  T
Q  104 cgacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    |||||||| |||||||||||||||||  | |||||||||||||||||    
T  17343153 cgacaaattaaaataatcatctccatcataattagtttttgttgtca 17343107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 19192200 - 19192273
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||||||||||||||    
T  19192200 gacatttattgttttgttattttgtggtgataagtgttaactacgatagaaaatgaaattaaagcctaccatat 19192273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 5739003 - 5738930
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  5739003 gacatttaatgttttgttattttatagtgataagtgttgactacaatagaaaatgaaattaaagtctaccatat 5738930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 5776115 - 5776042
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||    
T  5776115 gacatttaatgttttgttattttatagtgataagtgttgactacaatagaaaatgaaattaaagtctaccatat 5776042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 16913809 - 16913882
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||| |||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  16913809 gacattaattgttttgttattttgtggtgataagtgttgactataatagaaaatagaattaaagcctaccatat 16913882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 17339991 - 17339918
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  17339991 gacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 17339918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 24199986 - 24200059
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||| |||||||||||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||||||    
T  24199986 gacattaattgttttgttattttgtggtgataagtgttgactataatagaaaatagaattaaagcctaccatat 24200059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 43493523 - 43493596
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  43493523 gacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaatggaattaaagtctatcatat 43493596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 44266534 - 44266391
Alignment:
Q  1 aaatacgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaa 100  Q
    |||||| ||||||||||||| |||| |||||||||||||||| || ||||||||||||||||        |||  |||||||||||||||||||||||||    
T  44266534 aaatacaatagaggaagtaa-cctgatcttttcttatatccagttcatttacaataattgca-taaaaaataagcaaattggtgtattttcttatataaa 44266437  T
Q  101 taacgacaaatcaaaataatcatctccatttt-attagtttttgttgtcat 150  Q
    ||| ||     ||||||||||||||||||||| ||| ||||||||||||||    
T  44266436 taatga-----caaaataatcatctccattttaatttgtttttgttgtcat 44266391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 49680291 - 49680364
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||| |||||||||| ||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||    
T  49680291 gacaattattgtttttttattttgtggtgataagtgttgactacaatagaaaatataattaaagcctaccatat 49680364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 390
Target Start/End: Complemental strand, 19191487 - 19191416
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||| |||||||||    
T  19191487 catttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagtctaccatat 19191416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 54515556 - 54515623
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagccta 384  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||  ||||||||||||    
T  54515556 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagccta 54515623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 17195776 - 17195849
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||  |||||||||||| |||||    
T  17195776 gacatttattgttttgttattttgtggtgataaatgttgactacaatagaaaatggaattaaagcctatcatat 17195849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 43492360 - 43492287
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  43492360 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagtctatcatat 43492287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 317 - 381
Target Start/End: Original strand, 14404566 - 14404630
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagc 381  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||||||||    
T  14404566 gacatttattgttttgttattttgtggtgataagtgttgactacaatataaaatgaaattaaagc 14404630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 44266091 - 44266018
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||| ||| ||||||||  |||||||||    
T  44266091 gacatttattgttttgttattttatggtgataagtgttgactacaatagagaatgaaattaaaatctaccatat 44266018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 49679697 - 49679629
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||| | ||||||| |||| ||||||||||||||| |||||||||||||||||||    
T  49679697 ttattgttttcttattttatggtgataattgttgactacaatagaaaatgaaattaaagcctaccatat 49679629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 320 - 379
Target Start/End: Complemental strand, 14403751 - 14403692
Alignment:
Q  320 atttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaa 379  Q
    |||||||||||||||||||||| |||||||||||| ||||||||| |||||| |||||||    
T  14403751 atttattgttttgttattttgtggtgataagtgttgactacaatataaaatagaattaaa 14403692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 4524826 - 4524766
Alignment:
Q  330 ttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||| |||||||||||| |||||||||||||||| |||||||| |||| ||||    
T  4524826 ttgttattttgtggtgataagtgttaactacaatagaaaatagaattaaagtctacaatat 4524766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 19191762 - 19191708
Alignment:
Q  8 atagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgca 62  Q
    ||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||    
T  19191762 atagaggaagtaaccctagtcttttcttatatctaattcatttacaataattgca 19191708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 5742317 - 5742390
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcact-acaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||  | ||||||||| ||| | |||||| ||| |||||||||||||||||||    
T  5742317 acatttattgttttgttattttgtgattataagtgttgactaaaaatagagaatgaaattaaagcctaccatat 5742390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 5779276 - 5779349
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcact-acaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||  | ||||||||| ||| | |||||| ||| |||||||||||||||||||    
T  5779276 acatttattgttttgttattttgtgattataagtgttgactaaaaatagagaatgaaattaaagcctaccatat 5779349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 385
Target Start/End: Original strand, 44266859 - 44266924
Alignment:
Q  320 atttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctac 385  Q
    |||||||| ||||||||||| | ||||||| |||| | ||||||||||||| ||||||||||||||    
T  44266859 atttattgctttgttattttatggtgataaatgtttattacaatagaaaatgaaattaaagcctac 44266924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 24199407 - 24199331
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgt---tcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||  ||||||||||   | |||||||||||||||  |||||||| ||| |||||    
T  24199407 gacatttattgttttgttattttgtgatgataagtgttgatgactacaatagaaaatggaattaaagtctaacatat 24199331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Original strand, 17343666 - 17343720
Alignment:
Q  336 ttttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||| |||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  17343666 ttttgtggtgataagtgttgactacaatagaaaatggaattaaagtctatcatat 17343720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 9260730 - 9260585
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||        |||||||||| |||||||||||||||||||||||    
T  9260730 acgataaaggaagtaaccctagtcttttcttatatctaattcatttacaataattgcatgaaaaaataaataaatttgtgtattttcttatataaataac 9260631  T
Q  105 gacaaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
    ||||||| |||||||||||||||||  | |||||||||| ||||||    
T  9260630 gacaaattaaaataatcatctccatcgtaattagttttttttgtca 9260585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 3573969 - 3574115
Alignment:
Q  3 atacgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaata 102  Q
    |||||||| ||||||||| |||||||||||||||||| ||||| ||||||||||||||||        ||||||||||||||||||||| ||||||||||    
T  3573969 atacgataaaggaagtaaccctggtcttttcttatattcaattcatttacaataattgca-tcaaaaataaataaattggtgtattttcatatataaata 3574067  T
Q  103 acgacaaatcaaaataatcatctccatttt-attagtttttgttgtca 149  Q
    |||| |||| ||||||   ||||||||||| |||||||||||||||||    
T  3574068 acgataaattaaaatagatatctccattttaattagtttttgttgtca 3574115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 20633343 - 20633205
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacga 106  Q
    |||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||        ||| ||||||  ||||||||||||||||||||||||    
T  20633343 gatagaggaagtaaccctggtcttttcttatatctaattcatttacaataattgca--taaaagtaattaaatttatgtattttcttatataaataacga 20633246  T
Q  107 caaatcaaaataatcatctccatttta-ttagtttttgttg 146  Q
    |||||  ||||||||||||||||| || |||||||||||||    
T  20633245 caaatttaaataatcatctccattgtagttagtttttgttg 20633205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 20633893 - 20634034
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| |||| | |||||||||||| |||| ||||||||||||||||        ||||||||||  |||||||||||||||| |||||    
T  20633893 acgatagaggaagtaaccctgatgttttcttatatctaattcatttacaataattgca-taaaaaataaataaatttctgtattttcttatatagataac 20633991  T
Q  105 gacaaatcaaaataatcatctccatttta-ttagtttttgttg 146  Q
    |||||||  ||||||||||||||||| || |||||||||||||    
T  20633992 gacaaatttaaataatcatctccattgtagttagtttttgttg 20634034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 7 - 149
Target Start/End: Complemental strand, 36912214 - 36912078
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacga 106  Q
    |||||||||||||| ||| ||||||||||||||| |||| ||||||||||||||||         ||| ||||||| |||||||||||||||||||||||    
T  36912214 gatagaggaagtaaccctagtcttttcttatatctaattcatttacaataattgcataa------aaaaaaattgg-gtattttcttatataaataacga 36912122  T
Q  107 caaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
     |||| |||||||||||||||||  | |||||||||||||||||    
T  36912121 aaaattaaaataatcatctccatcgtaattagtttttgttgtca 36912078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 2284102 - 2284029
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  2284102 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatgaaattaaagcctatcatat 2284029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 20634089 - 20634162
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| |||||| |||||||| |||||||||||||||||||    
T  20634089 gacatttattgttttgttattttgtggtgataagtgttgactacagtagaaaatgaaattaaagcctaccatat 20634162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 36912607 - 36912680
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |||||    
T  36912607 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatgaaattaaagcctatcatat 36912680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 20651373 - 20651446
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||||||| |||||    
T  20651373 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctatcatat 20651446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 2284946 - 2285019
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  |||||||| ||| |||||    
T  2284946 gacatttattgttttgttattttgtagtgataaatgttaactacaatagaaaatggaattaaagtctatcatat 2285019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 3573660 - 3573587
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| | ||||||||| || ||||||||||||||| |||||||||||||| ||||    
T  3573660 gacatttattgttttgttattttatggtgataagttttgactacaatagaaaatgaaattaaagcctacaatat 3573587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 23288801 - 23288874
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| |||||||||||||  |||||||||||| |||||||||||||||  ||||||||||||||||||    
T  23288801 gacatttattattttgttattttgcggtgataagtgttgactacaatagaaaatggaattaaagcctaccatat 23288874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 36150165 - 36150238
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||| |||||||||||||||||||||||||||| | || |||||||||||||||| |||||||||||| |||||    
T  36150165 gacacttattgttttgttattttgtagtgataattattgactacaatagaaaatagaattaaagcctatcatat 36150238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 36911753 - 36911680
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  |||||||| ||| |||||    
T  36911753 gacatttattgttttgttattttgtagtgataaatgttaactacaatagaaaatggaattaaagtctatcatat 36911680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 2284495 - 2284631
Alignment:
Q  7 gatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacga 106  Q
    ||||||| |||||| ||| ||||||||||||||| |||| ||||||||||||||||         ||| ||||||| |||||||||||||||||||||||    
T  2284495 gatagagaaagtaaccctagtcttttcttatatctaattcatttacaataattgca------taaaaaaaaattgg-gtattttcttatataaataacga 2284587  T
Q  107 caaatcaaaataatcatctccat-tttattagtttttgttgtca 149  Q
     |||| |||||||| ||||||||  | ||||||||||| |||||    
T  2284588 aaaattaaaataattatctccatcgtaattagtttttggtgtca 2284631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 3574324 - 3574394
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctacca 387  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||||||||||  |||||||| ||||||    
T  3574324 gacatttattgttttgttattttgtagtgataggtgttgactataatagaaaattgaattaaagtctacca 3574394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 6583109 - 6583182
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| |||||||||||||| |||||||||||| |||||||||||||||  ||||||||| || |||||    
T  6583109 gacatttattattttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcttatcatat 6583182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 20633150 - 20633077
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| || ||| | |||||| ||||||||||||| |||||    
T  20633150 gacatttattgttttgttattttgtggtgataagtgttgaccacagtggaaaatgaaattaaagcctatcatat 20633077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 44531345 - 44531272
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||| |||||||| | || |||||||||||||||  |||||||||||| |||||    
T  44531345 gacatttattgttttgttattttgcagtgataattattgactacaatagaaaatggaattaaagcctatcatat 44531272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 322 - 390
Target Start/End: Complemental strand, 9260136 - 9260068
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||| |||| |||||||||||||||  |||||||| ||| |||||    
T  9260136 ttattgttttgttattttgtagtgataaatgttaactacaatagaaaatggaattaaagtctatcatat 9260068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 44531929 - 44531996
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagccta 384  Q
    |||||||||| |||||||||||||| ||||||| |||| |||||||||||||||  ||||||||||||    
T  44531929 gacatttattattttgttattttgtggtgataaatgttgactacaatagaaaatggaattaaagccta 44531996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 317 - 391
Target Start/End: Original strand, 32705576 - 32705650
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatatt 391  Q
    ||||| ||||||||||||||||||| || ||||||||| |||||||||||||||  ||||||||| || ||||||    
T  32705576 gacatctattgttttgttattttgtggtaataagtgttgactacaatagaaaatggaattaaagcttaacatatt 32705650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 9261127 - 9261200
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| |||| |||| |||||  |||||||| ||| |||||    
T  9261127 gacatttattgttttgttattttgtggtgataagtgttgactataatataaaatggaattaaagtctatcatat 9261200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 20651048 - 20650975
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||| ||||||||| |||||| |||||  ||||||||||||||  |||||||||||| |||||    
T  20651048 gacatttattgttttattattttgtggtgataggtgttggctacaatagaaaatttaattaaagcctatcatat 20650975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 380
Target Start/End: Original strand, 13105107 - 13105169
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaag 380  Q
    |||||||||||||||||||||||| ||||||| |||| ||||||||||| ||  |||||||||    
T  13105107 acatttattgttttgttattttgtggtgataattgttgactacaatagagaaggaaattaaag 13105169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 44531815 - 44531865
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaa 367  Q
    |||||||||| |||||||||||||| ||||||| |||| ||||||||||||    
T  44531815 gacatttattattttgttattttgtggtgataaatgttgactacaatagaa 44531865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 390
Target Start/End: Original strand, 13105623 - 13105695
Alignment:
Q  318 acatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||| |||||| ||  ||||||||||| ||||||||||| ||| ||| |||||| || |||||    
T  13105623 acatttattgttttattatttcgttatgataagtgttgactacaatagagaatgaaactaaagcatatcatat 13105695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 390
Target Start/End: Original strand, 34239463 - 34239530
Alignment:
Q  324 attgttttgttattttgtagtgataagtg-ttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||  |||| |||| || ||||| |||||||| |||||||||| |||||||||    
T  34239463 attgttttgttattttgtgatgatgagtgtttaactaccatagaaaagaaaattaaagtctaccatat 34239530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 336 - 390
Target Start/End: Complemental strand, 6582627 - 6582573
Alignment:
Q  336 ttttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||| | || |||||||||||||||  |||||||||||| |||||    
T  6582627 ttttgtagtgataattattgactacaatagaaaatggaattaaagcctatcatat 6582573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 7697636 - 7697560
Alignment:
Q  317 gacatttattgttttgttattttgt--agtgataagtgttcactacaatagaaaataaaattaaagcctaccatatt 391  Q
    |||||||||| ||||||||||||||   ||| |||||| | ||||||||  ||||| |||||||||| |||||||||    
T  7697636 gacatttattattttgttattttgtggtgtgttaagtgctgactacaatgaaaaatgaaattaaagcataccatatt 7697560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 7e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 25839022 - 25839133
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| ||| ||||||||||||||| |||| |||||| |||||||||        |||||||||| |||||||||||||||||||||||    
T  25839022 acgatagaggaagtaaccctagtcttttcttatatctaattcatttacgataattgcataaaaaaataaataaatttgtgtattttcttatataaataac 25839121  T
Q  105 gacaaatcaaaa 116  Q
    ||||||| ||||    
T  25839122 gacaaattaaaa 25839133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 20339493 - 20339614
Alignment:
Q  29 ttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgacaaatcaaaataatcatctcca 128  Q
    |||||||||||| |||| ||||||||||||||||        ||||| |||| |||||||||||||||||||||||||||||| ||||| ||||||||||    
T  20339493 ttttcttatatctaattcatttacaataattgca-taaaaaataaatgaatttgtgtattttcttatataaataacgacaaattaaaatcatcatctcca 20339591  T
Q  129 tttta-ttagtttttgttgtcat 150  Q
    || || |||||||||||||||||    
T  20339592 ttgtagttagtttttgttgtcat 20339614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 20339682 - 20339755
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| | |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  20339682 gacatttattgttttgttattttctggtgataagtgttgactacaatagaaaatgaaattaaagcctaccatat 20339755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 25838607 - 25838534
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||||| |||||    
T  25838607 gacatttattgttttgttattttgtagtgataagtgttaactacaatagaaaattgaattaaagcctatcatat 25838534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 3389420 - 3389347
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||  ||||||||||||||||||    
T  3389420 gacatttattgttttgttattttgtggtgataaatgttaactacaatagaaaatggaattaaagcctaccatat 3389347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 3391003 - 3391074
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||| |||||  ||||||||||||||||||    
T  3391003 catttattgttttgttattttgtggtgataagtgttgactacaataaaaaatggaattaaagcctaccatat 3391074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 19080342 - 19080269
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||||||||||||||||||  ||||||||||| ||||||||||||||| ||||||||| ||| |||||    
T  19080342 gacatttattgttttgttattttgtgatgataagtgttgactacaatagaaaatgaaattaaagtctatcatat 19080269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 19080824 - 19080897
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||| ||| |||||    
T  19080824 gacatttattgttttgttattttgtggtgataagtgttgactacaatagaaaattgaattaaagtctatcatat 19080897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 25839546 - 25839620
Alignment:
Q  317 gacatttattgttttgtt-attttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||||||| || |||||    
T  25839546 gacatttattgttttttttattttgtagtgataagtgttaactacaatagaaaatgaaattaaagcatatcatat 25839620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 3389875 - 3390013
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataac 104  Q
    |||||||||||||||| ||| || |||||||||||| |||| ||||||||||||||||        |||||||||| ||||||||  ||||       ||    
T  3389875 acgatagaggaagtaaccctagtattttcttatatctaattcatttacaataattgca-taaaaaataaataaatttgtgtatttatttat-------ac 3389966  T
Q  105 gacaaatcaaaataatcatctccatt-ttattagtttttgttgtcat 150  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||    
T  3389967 gacaaattaaaataatcatctccattgtaattagtttttgttgtcat 3390013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 322 - 390
Target Start/End: Original strand, 3636818 - 3636886
Alignment:
Q  322 ttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| ||||||| | ||||||| |||| | |||||||||||||  ||||||||||||||||||    
T  3636818 ttattgttttcttattttatggtgataattgttgagtacaatagaaaatggaattaaagcctaccatat 3636886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 368
Target Start/End: Complemental strand, 3636597 - 3636546
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaa 368  Q
    |||| |||||||||| ||||||||| || ||||||||| |||||||||||||    
T  3636597 gacaattattgttttcttattttgtggtaataagtgttgactacaatagaaa 3636546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 133
Target Start/End: Original strand, 63077 - 63195
Alignment:
Q  8 atagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgcacnnnnnnntaaataaattggtgtattttcttatataaataacgac 107  Q
    ||||||||||||| || | |||||| ||||||||| |||||||||||||||||||        ||||||||||||||||||||||||||||||||||||     
T  63077 atagaggaagtaaccc-gatcttttgttatatccagtttatttacaataattgca-taaaaaataaataaattggtgtattttcttatataaataacga- 63173  T
Q  108 aaatcaaaataatcatctccatttta 133  Q
        ||||||||||||||||||||||    
T  63174 ----caaaataatcatctccatttta 63195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 62749 - 62676
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||||||||||||  ||||||||||||| ||||    
T  62749 gacatttattgctttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagcctactatat 62676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 63574 - 63647
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| |||||||||||||| |||||||||||| | ||||||||| |||||||||||| ||||||||||    
T  63574 gacatttattcttttgttattttgtggtgataagtgttgattacaatagagaataaaattaaaacctaccatat 63647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 1415 - 1486
Alignment:
Q  319 catttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||  |||||||| |||||||||    
T  1415 catttattgttttgttattttgtggtgataagtgttgactacaatagaaaatggaattaaagtctaccatat 1486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 639 - 566
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||  ||||||||  ||||||||    
T  639 gacatttactgttttgttattttgtggtgataagtgttcactacaatagaaaatggaattaaagtataccatat 566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 1094 - 1151
Alignment:
Q  5 acgatagaggaagtaatcctggtcttttcttatatccaatttatttacaataattgca 62  Q
    |||||||||||||||| ||| ||||||||||||||| |||| ||||||||||| ||||    
T  1094 acgatagaggaagtaaccctagtcttttcttatatctaattcatttacaataaatgca 1151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 256994 - 256930
Alignment:
Q  324 attgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccat 388  Q
    ||||||||||||||||||  ||||||||||| ||||| |||||||||  ||||||||||||||||    
T  256994 attgttttgttattttgtgatgataagtgttgactacgatagaaaatggaattaaagcctaccat 256930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 257495 - 257568
Alignment:
Q  317 gacatttattgttttgttattttgtagtgataagtgttcactacaatagaaaataaaattaaagcctaccatat 390  Q
    |||||||||| |||||||||||  | |||||||||||| | || |||| |||||  ||||||||||||||||||    
T  257495 gacatttattattttgttatttcatggtgataagtgttgattataataaaaaatggaattaaagcctaccatat 257568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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