View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11174_low_2 (Length: 498)
Name: NF11174_low_2
Description: NF11174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11174_low_2 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Complemental strand, 34815575 - 34815094
Alignment:
| Q |
17 |
ctatgttttcctattgttgcagagacttgatactttggatgaatcattccttggtaatggaggaaatgtggaggaagatccatcggtgcatcaccatcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34815575 |
ctatgttttcctattgttgcagagacttgatactttggatgaatcattccttggtaatgaaggaaatgtggaggaagatccatcggtgcatcaccatcaa |
34815476 |
T |
|
| Q |
117 |
ggttttcatctttgaatttgctaaacatttacatgtttgcattatgtctgattgttcctatgctgactctttaacattgtcagctgctcccgagaatatt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34815475 |
ggttttcatctttgaatttgctaaacatttacatgtttgcattatgtctgattgttcctatgctgactctttaacattgtcagctgctcccgagaatatt |
34815376 |
T |
|
| Q |
217 |
accctatttgaacctttccaagctgatgcggttccttacaatcggtttgagaggtttttgcttccaccatccttttgtataattgtgttcttctttctag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34815375 |
accctatttgaacctttccaagctgatgcggttccttacaatcggtttgagaggtttttgcttccaccatccttttgtataattgtgttcttctttctag |
34815276 |
T |
|
| Q |
317 |
tagaatttttacttcatttagacattttaattttaaactttatgctaagtatatcagattttagatgcagttgtaaatattttcatgtgccctgctagca |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34815275 |
tagaatttttacttcatttagacattttaattttaaactttatgctaagtatatcagattttagatgcagttgtaaatattttcatgtgccctgctagca |
34815176 |
T |
|
| Q |
417 |
ggaccaatgaaccatctgtcctgttagctcattctcaaatctagagaaaatgatttattattattatctgcatcatttaccc |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34815175 |
ggaccaatgaaccatctgtcctgttagctcattctcaaatcttgagaaaatgatttattattattatctgcatcatttaccc |
34815094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 17 - 477
Target Start/End: Complemental strand, 35865790 - 35865346
Alignment:
| Q |
17 |
ctatgttttcctattgttgcagagacttgatactttggatgaatcattccttggtaatggaggaaatgtggaggaagatccatcggtgcatcaccatcaa |
116 |
Q |
| |
|
||||| ||| |||||||||||| ||||||||||||||||| |||||||||| | ||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
35865790 |
ctatgcttttctattgttgcagcgacttgatactttggat---------cttggtaatgaacgaattgaggaggaagatccatcggtgcatcaccatcaa |
35865700 |
T |
|
| Q |
117 |
ggttttcatctttgaatttgctaaacatttacatgtttgcattatgtctgattgttcctatgctgactctttaacattgtcagctgctcccgagaatatt |
216 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||| ||||| | ||| | |||||||| |||||| |||| ||| ||||||| ||| || |||||| |
|
|
| T |
35865699 |
ggttttcattttttgatttgctaaacattt-catgttggcattttatctaagcattcctatgttgactc-ttaaaattttcagctgatccggacaatatt |
35865602 |
T |
|
| Q |
217 |
accctatttgaacctttccaagctgatgcggttccttacaatcggtttgagaggtttttgcttccaccatcct--tttgtataattgtgttcttctttct |
314 |
Q |
| |
|
||| || ||||| ||||||||||||||| ||||| |||||| | ||||||||||| |||| ||||||||| ||| ||||| ||||||||||||| |
|
|
| T |
35865601 |
accttacctgaacgtttccaagctgatgcagttccacacaatcaatatgagaggttttggctttcaccatccttcttttgataatcatgttcttctttct |
35865502 |
T |
|
| Q |
315 |
agtagaatttttacttcatttagacattttaattttaaactttatgctaagtatatcagattttagatgcagttgtaaatattttcatgtgccctgctag |
414 |
Q |
| |
|
|| || || ||| |||||||||||||||||||| |||||||||| | |||||||| || |||||||||||||||| ||| |||||| |||| ||| |
|
|
| T |
35865501 |
agcag------tatttcttttagacattttaattttaagctttatgctatgaatatcagaattgagatgcagttgtaaat-tttccatgtgtcctgttag |
35865409 |
T |
|
| Q |
415 |
caggaccaatgaaccatctgtcctgttagctcattctcaaatctagagaaaatgatttattat |
477 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
35865408 |
caggatcaatgaaccatctatcctgttagctcattcttgaatcttgagaaaatggtttattat |
35865346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 202
Target Start/End: Original strand, 34839993 - 34840025
Alignment:
| Q |
170 |
gttcctatgctgactctttaacattgtcagctg |
202 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
34839993 |
gttcctatgttgactctttaacattgtcagctg |
34840025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University