View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11174_low_3 (Length: 468)
Name: NF11174_low_3
Description: NF11174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11174_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 15 - 454
Target Start/End: Complemental strand, 51457308 - 51456864
Alignment:
| Q |
15 |
aacatgcagtgagtatacgtaataacaggcaaaaataccaatagataaattgaatgaagaggatgcaatgacaacaataaataatctggatatg-----c |
109 |
Q |
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| T |
51457308 |
aacatgcagtgagtatacgtaataacaggcaaaaataccaatagataaattgaatgaagaggatgcaatgacaacaataaataatctggatatgtgatgc |
51457209 |
T |
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| Q |
110 |
aaaaacaaatggggacaccagacagcaagaaatttagataaatttaaaaggataagattacaagatattgaatgagaagtaggaagcagcatttgttgaa |
209 |
Q |
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| T |
51457208 |
aaaaacaaatggggacaccagacagcaagaaatttagataaatttaaaaggataagattacaagatattgaatgagaagtaggaagcagcatttgttgaa |
51457109 |
T |
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| Q |
210 |
aatgttgggagaaacaacataggacaagcatgaacgactgcaactttatgactaacacatgccaattacactcaaaaaattggcttgaggctcacaagtc |
309 |
Q |
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| T |
51457108 |
aatgttgggagaaacaacatatgacaagcatgaacgactgcgactttatgactaacacatgccaattacactcaaaaaattggcttgaggctcacaagtc |
51457009 |
T |
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| Q |
310 |
acaaccctaatgttgtatttcttttaacatgtagaactacaaaccttgtaatcttatctcttcataacccaagagggtagaatgtctataaactaatttt |
409 |
Q |
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| T |
51457008 |
acaaccctaatgttgtatttcttttaacatgtagaactacaaaccttgtactcttatctcttcataacccaagagggtagaatgtctataaactaatttt |
51456909 |
T |
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| Q |
410 |
aacagaagaaccatccatccaccaaaaaacaggtgtactgaaact |
454 |
Q |
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| T |
51456908 |
aacagaagaaccatccatccaccaaaaaacaggtggactgaaact |
51456864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 111 - 288
Target Start/End: Complemental strand, 51439787 - 51439607
Alignment:
| Q |
111 |
aaaacaaatggggacaccagacagcaagaaattt----agataaatttaaaaggataagattacaagatattgaatgagaagtaggaagcagcatttgtt |
206 |
Q |
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| T |
51439787 |
aaaacaagtagggacaccatacagcaataaattgtgcgagataaatttaaaag-ataagatgacaggatattgaatgagaagtgaggagtagcatttctt |
51439689 |
T |
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| Q |
207 |
gaaaatgttgggagaaacaacataggacaagcatgaacgactgcaactttatgactaacacatgccaattacactcaaaaaa |
288 |
Q |
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| T |
51439688 |
gaaaaggttgggagaaacagcgtatgacaagcaccaaggacagagacattatgactaccacatgccaattacactcaaaaaa |
51439607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 43161689 - 43161562
Alignment:
| Q |
91 |
ataaataatctggatatg-----caaaaacaaatggggacaccagacagcaagaaatttagataaatttaaaaggataagattacaagatattgaatgag |
185 |
Q |
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| T |
43161689 |
ataaataatctggatatgtaatccaaaaacaaattgggacacccaacatcaaaaaatttagaccaatttaaaag-ataagattacaagatattgaatgag |
43161591 |
T |
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| Q |
186 |
aagtaggaagcagcatttgttgaaaatgt |
214 |
Q |
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| T |
43161590 |
aagtgtgaagtcgcatttgttgaaaatgt |
43161562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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