View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11174_low_5 (Length: 361)
Name: NF11174_low_5
Description: NF11174
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11174_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 26598028 - 26597678
Alignment:
| Q |
1 |
agacagttgtcgatctaggagtttcgtcctcctatatatgccaacttatgtctcaagtccatctatacagtttgtagacccttaagcctcacgcgcattg |
100 |
Q |
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| T |
26598028 |
agacagttgtcgatctaggagtttcgtcctcctatatatgccaacttatgtctcaggtccatctatatagtttgtagacccttaagcctcacacgcattg |
26597929 |
T |
|
| Q |
101 |
acattgtctatcttgtgcgttaagagtgtttgcaagtacacattatttttatggaacaaccgccatatttaactacttaattgttcctcaggtccttgat |
200 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26597928 |
acattgtctgtcttgtgcattaagagtgtttgcaagtacacattatttttatggaacaactgccatatttaactacttaattgttcctcaggtccttgat |
26597829 |
T |
|
| Q |
201 |
gtaggtcaggtttctattcaatcataagattatttaaaacttgaaatcatgaatcactaataaacttgaataagacacatgtaattacattgatgtaatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26597828 |
ctaggtcaggtttctattcaatcataagattatttaaaacttgaaatcatgaatcactaataaacttgaataagacacatgtaattacattgatataatt |
26597729 |
T |
|
| Q |
301 |
ttataaaccaaatatgggtggttaatcttcttctacccttcgaattctctg |
351 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
26597728 |
ttataaaccaaatatgggtagttaatcttcttctacccttcgaatcctctg |
26597678 |
T |
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