View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11175_high_1 (Length: 818)
Name: NF11175_high_1
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_high_1 |
 | |
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| [»] scaffold0777 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 19 - 678
Target Start/End: Complemental strand, 24930425 - 24929767
Alignment:
| Q |
19 |
agctaactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctccgcatgccatggaacctta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24930425 |
agctaactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctccgcatgccatggaacctta |
24930326 |
T |
|
| Q |
119 |
cactgtgcacagaacagccggtgacaagacagacactcgcaactagtcaaaacctctcccctatcattatcattcaccaataaaacagaacaatccttga |
218 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
24930325 |
cactgtgcacagaacagccgatgacaagacggacactcgcaactagtcaaaacatctcccttatcattatcattcaccagcaaaacagaacaatccttga |
24930226 |
T |
|
| Q |
219 |
atgcacaataagtcttttgctccaatgcaattttatactcatactttgccaattcccatcgatctataaattctttaggcaaaatatgttgcaaatgtct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
24930225 |
atgcacaataagtcttttgctccaatgcaattttagactcatactttgccaattcccatagatctataaattatttaggcaaaatatgttgcaaatgtct |
24930126 |
T |
|
| Q |
319 |
tggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatccacatatttggaaatacaatcaacacaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
24930125 |
tggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatctacatatttggaaatacaatcaacacaa |
24930026 |
T |
|
| Q |
419 |
aagagatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggactcaccaattaacatac |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
24930025 |
aagagatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggactcaccaatt-acatac |
24929927 |
T |
|
| Q |
519 |
cagtggtgaattcttctggctcgtcatcaatgattaatggtttcttcatcttttcatcgtagctttctgaagtgaattttctctttagttttttctgctt |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
24929926 |
cagtggtgaattcttctggctcgtcatcaatgattaatggtttcttcatcttttcatcatagctttctgaagtggattttctctttagttttttctgctt |
24929827 |
T |
|
| Q |
619 |
tgtatcagaatcatgttctgacggttcttttatcaccagcggcgccgagaataagcggtg |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24929826 |
tgtatcagaatcatgttctgacggttcttttatcactagcggcgccgagaataagcggtg |
24929767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 23 - 508
Target Start/End: Original strand, 24976456 - 24976941
Alignment:
| Q |
23 |
aactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctccgcatgccatggaaccttacact |
122 |
Q |
| |
|
||||||||||| ||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24976456 |
aactccaaaaatttatcatccaaatcttgttcctttttaggacgtttcaaatcttgaaactcctgacaattcatctccgcatgccatggaaccttacatt |
24976555 |
T |
|
| Q |
123 |
gtgcacagaacagccggtgacaagacagacactcgcaactagtcaaaacctctcccctatcattatcattcaccaataaaacagaacaatccttgaatgc |
222 |
Q |
| |
|
||||||| || || ||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||| ||||| ||||||||||||| ||| |||| |
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|
| T |
24976556 |
gtgcacaaaatagtcggtgacaagatggacactcgcaactagtcaaaaccacacccctattattatcattaaccaacaaaacagaacaattcttaaatgg |
24976655 |
T |
|
| Q |
223 |
acaataagtcttttgctccaatgcaattttatactcatactttgccaattcccatcgatctataaattctttaggcaaaatatgttgcaaatgtcttggc |
322 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||||||| ||| | |||||||| ||| ||||||||| ||||||||||||||| ||||||||| ||| |
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| T |
24976656 |
acaataagtcttttggtccaatgcaattttagactcatacactgcaagttcccatctatcaataaattctctaggcaaaatatgtttcaaatgtctcggc |
24976755 |
T |
|
| Q |
323 |
aacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatccacatatttggaaatacaatcaacacaaaaga |
422 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
24976756 |
tcaaatttcacaaaacaatttggagttggacaagtcaccttaaccacattgttgttaatttgagaaaccacatatttggaaatacattcaacacaaaaga |
24976855 |
T |
|
| Q |
423 |
gatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggactcacca |
508 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||| |||||| |||||| |
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| T |
24976856 |
ggtggttgcaactctttcttttgaacatatctgaatctgttttcaaatcaaagcatataccacataagcttcgtgaggattcacca |
24976941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 25027442 - 25027372
Alignment:
| Q |
77 |
tgaaactcctgacaattcatctccgcatgccatggaaccttacactgtgcacagaacagccggtgacaaga |
147 |
Q |
| |
|
|||||||||||||||||||| | | |||||| ||||| ||||| |||||||| ||||||| |||||||| |
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|
| T |
25027442 |
tgaaactcctgacaattcatatttgtatgccacggaactttacattgtgcacaaaacagcctatgacaaga |
25027372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 21788125 - 21788190
Alignment:
| Q |
292 |
tttaggcaaaatatgttgcaaatgtcttggcaacaattttgcagaacaatttggagttggacaagt |
357 |
Q |
| |
|
|||||| ||||| |||||||| ||| ||||| |||||| |||||||||||||| |||||||||| |
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| T |
21788125 |
tttaggtaaaatgtgttgcaattgttttggcttcaatttcacagaacaatttggacttggacaagt |
21788190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 536; Significance: 0; HSPs: 6)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 678
Target Start/End: Original strand, 1507 - 2166
Alignment:
| Q |
19 |
agctaactccaaaaacttatcatccaaatctatttcatttttatcgcgtttcaaatcttgaaactcctgacaattcatctccgcatgccatggaacctta |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||| ||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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|
| T |
1507 |
agctaacttcaaaaacttatcatccaaatctacttcatttgtattgtgtttcaaatcttgaaattcctgacagttcatctccgcatgccatggaacctta |
1606 |
T |
|
| Q |
119 |
cactgtgcacagaacagccggtgacaagacagacactcgcaactagtcaaaacctctcccctatcattatcattcaccaataaaacagaacaatccttga |
218 |
Q |
| |
|
|| |||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
1607 |
cattgtgcatagaatagccggtgacaagacggacactcgcaactagtcaaaacctctcccctatcattatcattcaccagcaaaacagaacaatccttga |
1706 |
T |
|
| Q |
219 |
atgcacaataagtcttttgctccaatgcaattttatactcatactttgccaattcccatcgatctataaattctttaggcaaaatatgttgcaaatgtct |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1707 |
atgcacaataagtcttttgctccaatgcaattttagactcatactttgccaactcccatcgatcgataaattctttaggcaaaatatgttgcaaatgtct |
1806 |
T |
|
| Q |
319 |
tggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatccacatatttggaaatacaatcaacacaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1807 |
tggcaacaattttgcagaacaatttggagttggacaagtcaccttaaccacattattgttgagttgagaatccacatatttggaaatacaatcaacacaa |
1906 |
T |
|
| Q |
419 |
aagagatggttgcaactctttcttttgaacatatcaaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggactcaccaattaacatac |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1907 |
aagagatggttgcaactctttcttttgaacatatccaaatcagttttcaaatcaaagcatataccacatgagcttcttgaggattcaccaattaacatct |
2006 |
T |
|
| Q |
519 |
cagtggtgaattcttctggctcgtcatcaatgattaatggtttcttcatcttttcatcgtagctttctgaagtgaattttctctttagttttttctgctt |
618 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
2007 |
tagtggtgaattcttctggttcctcatcaatgattaatggtttcttcatcttttcatcgtagctttctgaagtggattttctctttagtttcttctgctt |
2106 |
T |
|
| Q |
619 |
tgtatcagaatcatgttctgacggttcttttatcaccagcggcgccgagaataagcggtg |
678 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||| || ||||| |||||| ||||||| |
|
|
| T |
2107 |
tgcatcagagtcatgttctgacggttcttttatcactagtggcgcggagaatgagcggtg |
2166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 606 - 678
Target Start/End: Original strand, 2256 - 2328
Alignment:
| Q |
606 |
gttttttctgctttgtatcagaatcatgttctgacggttcttttatcaccagcggcgccgagaataagcggtg |
678 |
Q |
| |
|
|||| |||| ||||| |||||| |||||||||||||||||||||||||| || ||||| |||||| ||||||| |
|
|
| T |
2256 |
gtttcttctcctttgcatcagagtcatgttctgacggttcttttatcactagtggcgcggagaatgagcggtg |
2328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 606 - 670
Target Start/End: Original strand, 2418 - 2482
Alignment:
| Q |
606 |
gttttttctgctttgtatcagaatcatgttctgacggttcttttatcaccagcggcgccgagaat |
670 |
Q |
| |
|
|||| |||| ||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||| |
|
|
| T |
2418 |
gtttcttctcctttgcatcagaatcatgttctgactgttcttttatcactaacggcgccgagaat |
2482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 742 - 793
Target Start/End: Original strand, 2560 - 2611
Alignment:
| Q |
742 |
aagtggttttctcttcatcatgtttggtttcttctcctttgcctgagaatct |
793 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
2560 |
aagtgattttctcttcatcatgtttggtttcttctcctttgcattagaatct |
2611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 730 - 797
Target Start/End: Original strand, 2380 - 2447
Alignment:
| Q |
730 |
ataggcatctcgaagtggttttctcttcatcatgtttggtttcttctcctttgcctgagaatcttgtt |
797 |
Q |
| |
|
|||| ||||| |||||| ||||||||||| ||||| |||||||||||||||||| | |||||| |||| |
|
|
| T |
2380 |
atagccatctggaagtgattttctcttcaccatgtgtggtttcttctcctttgcatcagaatcatgtt |
2447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 730 - 783
Target Start/End: Original strand, 2218 - 2271
Alignment:
| Q |
730 |
ataggcatctcgaagtggttttctcttcatcatgtttggtttcttctcctttgc |
783 |
Q |
| |
|
|||| ||||| |||||| ||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
2218 |
atagccatctggaagtgattttctcttcaacatgtatggtttcttctcctttgc |
2271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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