View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_high_10 (Length: 483)
Name: NF11175_high_10
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 467
Target Start/End: Complemental strand, 7969080 - 7968629
Alignment:
| Q |
16 |
atttgcacttctcaaatcattgaagtgaagctgaaaacgagttgttgatgatttgacagatagaattaacaagaccagacaaatttacaccaaaaatagt |
115 |
Q |
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| T |
7969080 |
atttgcacttctcaaatcattgaagtgaagctgaaaatgagttgttgatgatttgacagatagaattaacaagaccagacaaatttacaccaaaaatagt |
7968981 |
T |
|
| Q |
116 |
tgaaaggaaagaagactatgttcgagttgagtatcgaagctcaatcttgggggtatgtatgtgtgaattacatctaatgaaatcatgaaataaaatcatc |
215 |
Q |
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| T |
7968980 |
tgaaaggaaagaagactatgttcgagttgagtatcgaagctcaatcttgggggtatgtatgtgtgaattacatctactgaaatcatgaaataaaatcatc |
7968881 |
T |
|
| Q |
216 |
atattgatattcatttaatacatttatatgattcgaagaacatgctctaatcacctcctccccacattgccatgtaaacagtttgtagacgatgttgagt |
315 |
Q |
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| T |
7968880 |
atattgatattcatttaatacatttatatgattcgaagaacatgctctaatcgctccctccgcacattgccatgtaaacagtttgtagacgatgttgagt |
7968781 |
T |
|
| Q |
316 |
tttggttcccaccgggtaagggctcaatcgtggagtatcgatctgcgtcaaggtttggaaactttgattttgatgtgaatagaaaaagaataaaggtaaa |
415 |
Q |
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| T |
7968780 |
tttggttcccaccaggtaagggctcaatcgtggagtatcgatctgcgtcaaggttgggaaactttgattttgatgtgaatagaaaaagaataaaggtaaa |
7968681 |
T |
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| Q |
416 |
actccatcactcatatgcattttctctactgctttcttcattgttatgttag |
467 |
Q |
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| T |
7968680 |
actccatcactcatatgcattttctctactgctttcttcattgttatgttag |
7968629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 291 - 413
Target Start/End: Original strand, 28064234 - 28064356
Alignment:
| Q |
291 |
aaacagtttgtagacgatgttgagttttggttcccaccgggtaagggctcaatcgtggagtatcgatctgcgtcaaggtttggaaactttgattttgatg |
390 |
Q |
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||||||||||| || ||||||||||| ||||| |||| | ||||| |||||| || ||||||||||| || ||||| |||| || ||||||||||||| |
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| T |
28064234 |
aaacagtttgtggatgatgttgagttctggtttccacaagataaggactcaattgttgagtatcgatcagcagcaagggttgggaattttgattttgatg |
28064333 |
T |
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| Q |
391 |
tgaatagaaaaagaataaaggta |
413 |
Q |
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| T |
28064334 |
tgaatagaagaagaatcaaggta |
28064356 |
T |
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