View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_high_16 (Length: 389)
Name: NF11175_high_16
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 21 - 374
Target Start/End: Complemental strand, 29879100 - 29878747
Alignment:
| Q |
21 |
catgcatgtatagtgaacgtgttagttaaatttcaatgagagaaatttatgaagacaattttgttggtgaagtaaaccaatgtggcagatctatcatcga |
120 |
Q |
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| T |
29879100 |
catgcatgtatagtgaacgtgttagttaaatttcaatgagagaaatttatgaagacaattttgttggtgaagtaaaccaatgtggcagatctatcatcga |
29879001 |
T |
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| Q |
121 |
ggtcaattatttgattctttttatgccaaattgcattattttttatatttggtttccttagataaactttgttcaatacattctgacacattaatgatga |
220 |
Q |
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| T |
29879000 |
ggtcaattatttgattctttttatgccaaattgcattattttttatatttggtttccttagataaactttgttcaatacattctgacacattaatgatga |
29878901 |
T |
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| Q |
221 |
gttttcagtaagaaatagttataaatcacacatgttgagataactaacttataactcacatcccgtttgataaagaaacctgaagcatcaaattaggtga |
320 |
Q |
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| T |
29878900 |
gttttcagtaagaaatagttataaatcacacatgttgagataactaacttataactaacatcccgtttgataaagaaacctgaagcatcaaattaggtga |
29878801 |
T |
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| Q |
321 |
tagggaaaccatgcattgtatctgctcatgattcctcctagctatttccttcat |
374 |
Q |
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| T |
29878800 |
tagggaaaccatgcattgtatctgctcatgattcctcctagctatttccttcat |
29878747 |
T |
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