View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_high_18 (Length: 387)

Name: NF11175_high_18
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_high_18
NF11175_high_18
[»] chr7 (1 HSPs)
chr7 (1-368)||(30339154-30339521)
[»] chr3 (3 HSPs)
chr3 (168-200)||(35696647-35696679)
chr3 (172-200)||(32582630-32582658)
chr3 (172-200)||(45021354-45021382)
[»] chr4 (4 HSPs)
chr4 (173-208)||(30070322-30070357)
chr4 (172-207)||(39033665-39033700)
chr4 (172-200)||(27611822-27611850)
chr4 (172-200)||(39276549-39276577)
[»] scaffold0010 (1 HSPs)
scaffold0010 (172-206)||(166769-166803)
[»] chr5 (2 HSPs)
chr5 (172-206)||(31812160-31812194)
chr5 (168-200)||(31806591-31806623)
[»] chr1 (5 HSPs)
chr1 (172-206)||(32348436-32348470)
chr1 (172-206)||(35272490-35272524)
chr1 (172-200)||(1714041-1714069)
chr1 (172-200)||(3161025-3161053)
chr1 (172-200)||(3949640-3949668)
[»] chr8 (3 HSPs)
chr8 (172-200)||(12524607-12524635)
chr8 (172-200)||(29861519-29861547)
chr8 (172-200)||(43408710-43408738)
[»] chr2 (1 HSPs)
chr2 (173-201)||(4135589-4135617)


Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 30339154 - 30339521
Alignment:
Q  1 tgttagaggaagctgaaattggttgaatgagtaaaagtgtgcgatatgaagtcaacgtgacacatatatggaaagaaatctactagttgttatcgttgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||    
T  30339154 tgttagaggaagctgaaattggttgaatgagtaaaagtgtgcgatatgaagtcaatgtgacacatatatggaaagtaatcgactagttgttatcgttgtt 30339253  T
Q  101 tggtaaaatgtagtggagagctgataaagtagttgatagtagatcagcttatagcagataatttagcagcagattgaatttgtagtgtttggtaaaatta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339254 tggtaaaatgtagtggagagctgataaagtagttgatagtagatcagcttatagcagataatttagcagcagattgaatttgtagtgtttggtaaaatta 30339353  T
Q  201 tcggttattataagtttctagcttacctaattcttatctaactattagtaatcaaaccgaagttgattatagaatagcttctagcttacaaaagtttctc 300  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339354 tcggttattataagtttctagcttacctgattcatatctaactattagtaatcaaaccgaagttgattatagaatagcttctagcttacaaaagtttctc 30339453  T
Q  301 cgttatnnnnnnntttgtacgaaaaagttcttatgagcttataaatgttgaaattaaacgagagatgt 368  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  30339454 cgttataaaaaaatttgtacgaaaaagttcttatgagcttataaatgttgaaatttaacgagatatgt 30339521  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 35696679 - 35696647
Alignment:
Q  168 agcagattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||||||    
T  35696679 agcagattgaatttgtagtgtttggtaaaatta 35696647  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 32582658 - 32582630
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  32582658 gattgaatttgtagtgtttggtaaaatta 32582630  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 45021354 - 45021382
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  45021354 gattgaatttgtagtgtttggtaaaatta 45021382  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 30070357 - 30070322
Alignment:
Q  173 attgaatttgtagtgtttggtaaaattatcggttat 208  Q
    |||||||||||||||||||||||||||| |||||||    
T  30070357 attgaatttgtagtgtttggtaaaattagcggttat 30070322  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 39033700 - 39033665
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaattatcggtta 207  Q
    |||||||||||||||||||| |||||||||||||||    
T  39033700 gattgaatttgtagtgtttgataaaattatcggtta 39033665  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 27611822 - 27611850
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  27611822 gattgaatttgtagtgtttggtaaaatta 27611850  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 39276577 - 39276549
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  39276577 gattgaatttgtagtgtttggtaaaatta 39276549  T

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Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 166803 - 166769
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaattatcggtt 206  Q
    ||||||||||||||||||||||||||||| |||||    
T  166803 gattgaatttgtagtgtttggtaaaattagcggtt 166769  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 31812194 - 31812160
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaattatcggtt 206  Q
    ||||||||||||||||||||||||||||| |||||    
T  31812194 gattgaatttgtagtgtttggtaaaattaacggtt 31812160  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 31806591 - 31806623
Alignment:
Q  168 agcagattgaatttgtagtgtttggtaaaatta 200  Q
    ||||||||||||||||| |||||||||||||||    
T  31806591 agcagattgaatttgtattgtttggtaaaatta 31806623  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 32348470 - 32348436
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaattatcggtt 206  Q
    ||||||||||||||||||||||||||||| |||||    
T  32348470 gattgaatttgtagtgtttggtaaaattagcggtt 32348436  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 35272490 - 35272524
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaattatcggtt 206  Q
    ||||||||||||||||||| |||||||||||||||    
T  35272490 gattgaatttgtagtgtttagtaaaattatcggtt 35272524  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 1714041 - 1714069
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  1714041 gattgaatttgtagtgtttggtaaaatta 1714069  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 3161053 - 3161025
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  3161053 gattgaatttgtagtgtttggtaaaatta 3161025  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 3949640 - 3949668
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  3949640 gattgaatttgtagtgtttggtaaaatta 3949668  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 12524607 - 12524635
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  12524607 gattgaatttgtagtgtttggtaaaatta 12524635  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 29861547 - 29861519
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  29861547 gattgaatttgtagtgtttggtaaaatta 29861519  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 43408738 - 43408710
Alignment:
Q  172 gattgaatttgtagtgtttggtaaaatta 200  Q
    |||||||||||||||||||||||||||||    
T  43408738 gattgaatttgtagtgtttggtaaaatta 43408710  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 201
Target Start/End: Complemental strand, 4135617 - 4135589
Alignment:
Q  173 attgaatttgtagtgtttggtaaaattat 201  Q
    |||||||||||||||||||||||||||||    
T  4135617 attgaatttgtagtgtttggtaaaattat 4135589  T

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