View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_high_23 (Length: 318)

Name: NF11175_high_23
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_high_23
NF11175_high_23
[»] chr1 (1 HSPs)
chr1 (15-303)||(26813046-26813332)


Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 26813332 - 26813046
Alignment:
Q  15 gacatcaacctcatcagaaactgtaaaatgggattgaggcaaagacataaactgtctcaaggaaggattcatcattacattattttgatatcctctaaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26813332 gacatcaacctcatcagaaactgtaaaatgggattgaggcaaagacataaactgtctcaaggaaggattcatcattacattattttgatatcctctaaga 26813233  T
Q  115 cagaatatgccattgcaaggacccattatttcagtccaatatttactatcgcattcataaggaggcttcaaaatttgagaggaaacaagtcctttgggta 214  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26813232 cagaatatgccattgcaaggacccattattacagtccaatatttactatcgcattcataaggaggcttcaaaatttgagaggaaacaagtcctttgggt- 26813134  T
Q  215 ctcattggtattccaagaaaaaactgaaatataaggtttaaaagaaggtatacgaaggaccaagagatgatgcttttcttggttgttgt 303  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26813133 -tcattggtattccaagaaaaaactgaaatataaggtttaaaagaaggtatacgaaggaccaagagatgatgcttttcttggttgttgt 26813046  T

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