View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_high_24 (Length: 311)

Name: NF11175_high_24
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_high_24
NF11175_high_24
[»] chr8 (24 HSPs)
chr8 (9-267)||(16382493-16382755)
chr8 (187-293)||(36826959-36827059)
chr8 (189-267)||(44872332-44872410)
chr8 (190-256)||(35201954-35202020)
chr8 (189-258)||(2827351-2827420)
chr8 (189-258)||(16382421-16382490)
chr8 (190-250)||(29789837-29789897)
chr8 (197-255)||(26191772-26191830)
chr8 (201-258)||(3270579-3270636)
chr8 (197-258)||(13832549-13832610)
chr8 (190-267)||(26492376-26492453)
chr8 (196-289)||(36827003-36827091)
chr8 (200-268)||(41569508-41569575)
chr8 (187-267)||(44838841-44838921)
chr8 (201-260)||(9421319-9421378)
chr8 (191-258)||(33570584-33570651)
chr8 (196-258)||(26191845-26191907)
chr8 (187-249)||(42348740-42348802)
chr8 (205-293)||(44081964-44082049)
chr8 (187-261)||(44838767-44838841)
chr8 (196-261)||(8104452-8104517)
chr8 (190-255)||(30245583-30245648)
chr8 (206-258)||(28435424-28435476)
chr8 (206-258)||(36308590-36308642)
[»] chr2 (33 HSPs)
chr2 (189-267)||(8079411-8079489)
chr2 (188-290)||(6006676-6006785)
chr2 (189-268)||(3463216-3463295)
chr2 (196-267)||(14394783-14394854)
chr2 (190-268)||(33052138-33052216)
chr2 (189-256)||(35797847-35797914)
chr2 (189-255)||(4101943-4102009)
chr2 (190-246)||(10237678-10237735)
chr2 (189-258)||(18967219-18967288)
chr2 (190-258)||(6006758-6006826)
chr2 (206-258)||(36396867-36396919)
chr2 (196-267)||(19250181-19250252)
chr2 (203-258)||(28602223-28602278)
chr2 (189-268)||(42230588-42230667)
chr2 (191-293)||(44949376-44949485)
chr2 (206-268)||(5144334-5144396)
chr2 (188-258)||(29573890-29573960)
chr2 (201-258)||(4032684-4032741)
chr2 (197-246)||(5717875-5717924)
chr2 (190-267)||(11160440-11160517)
chr2 (190-267)||(18967291-18967368)
chr2 (190-267)||(21208959-21209036)
chr2 (189-258)||(33363635-33363704)
chr2 (207-267)||(4184792-4184852)
chr2 (190-258)||(5773854-5773922)
chr2 (190-258)||(10237597-10237665)
chr2 (201-293)||(12017793-12017885)
chr2 (190-258)||(20556662-20556730)
chr2 (207-267)||(25899425-25899485)
chr2 (189-249)||(32514863-32514923)
chr2 (201-293)||(38262026-38262118)
chr2 (188-268)||(42270049-42270129)
chr2 (196-268)||(45095518-45095589)
[»] chr7 (22 HSPs)
chr7 (201-293)||(42061776-42061868)
chr7 (189-293)||(26153910-26154021)
chr7 (196-256)||(25250235-25250295)
chr7 (199-255)||(12307822-12307878)
chr7 (205-293)||(31669829-31669912)
chr7 (189-293)||(5212089-5212188)
chr7 (190-289)||(28324716-28324822)
chr7 (207-259)||(41699131-41699183)
chr7 (189-268)||(21907249-21907328)
chr7 (190-249)||(24936677-24936736)
chr7 (205-264)||(31857140-31857199)
chr7 (187-249)||(4027303-4027365)
chr7 (196-258)||(26743193-26743255)
chr7 (190-248)||(42644077-42644135)
chr7 (190-267)||(24166259-24166336)
chr7 (189-258)||(31857028-31857097)
chr7 (190-267)||(34118345-34118422)
chr7 (196-233)||(41103114-41103151)
chr7 (189-261)||(5082671-5082743)
chr7 (205-261)||(28324793-28324849)
chr7 (187-259)||(30005869-30005941)
chr7 (190-258)||(36711615-36711683)
[»] chr3 (33 HSPs)
chr3 (196-267)||(37740012-37740083)
chr3 (187-293)||(32956411-32956524)
chr3 (190-293)||(39333286-39333396)
chr3 (182-267)||(1927489-1927574)
chr3 (189-293)||(25990644-25990755)
chr3 (196-267)||(7680186-7680257)
chr3 (187-258)||(29352804-29352875)
chr3 (190-267)||(39975159-39975234)
chr3 (190-268)||(40326434-40326512)
chr3 (189-258)||(1676265-1676334)
chr3 (189-293)||(17940183-17940285)
chr3 (205-293)||(17940222-17940308)
chr3 (201-293)||(42790890-42790989)
chr3 (187-267)||(24312557-24312637)
chr3 (202-293)||(29352736-29352834)
chr3 (190-258)||(43883939-43884007)
chr3 (201-261)||(51486433-51486493)
chr3 (190-293)||(54008241-54008351)
chr3 (190-261)||(16894243-16894314)
chr3 (190-261)||(17004954-17005025)
chr3 (207-258)||(24226282-24226333)
chr3 (193-256)||(28811592-28811655)
chr3 (189-256)||(29726285-29726352)
chr3 (190-261)||(33638987-33639058)
chr3 (203-258)||(37331675-37331730)
chr3 (188-267)||(48909101-48909180)
chr3 (187-261)||(34935531-34935605)
chr3 (197-258)||(7328719-7328780)
chr3 (189-258)||(25995618-25995687)
chr3 (201-261)||(13084118-13084178)
chr3 (196-256)||(29076527-29076587)
chr3 (189-261)||(29076598-29076670)
chr3 (187-231)||(53753823-53753867)
[»] chr5 (39 HSPs)
chr5 (190-268)||(22473934-22474012)
chr5 (196-267)||(5089520-5089591)
chr5 (187-268)||(5787545-5787626)
chr5 (189-293)||(32146822-32146933)
chr5 (203-293)||(40914147-40914244)
chr5 (189-259)||(6205143-6205213)
chr5 (188-258)||(8694559-8694629)
chr5 (187-249)||(16018505-16018566)
chr5 (201-258)||(6205075-6205132)
chr5 (196-261)||(15966716-15966781)
chr5 (188-293)||(25713906-25714007)
chr5 (188-258)||(15475916-15475986)
chr5 (189-267)||(23042029-23042107)
chr5 (201-258)||(9087582-9087639)
chr5 (190-267)||(13359157-13359234)
chr5 (186-267)||(14064802-14064883)
chr5 (201-293)||(31758902-31759001)
chr5 (189-258)||(37039768-37039837)
chr5 (189-254)||(38404143-38404208)
chr5 (215-267)||(7275413-7275465)
chr5 (197-261)||(8468429-8468493)
chr5 (201-249)||(23117497-23117545)
chr5 (206-258)||(36414794-36414846)
chr5 (203-293)||(13461559-13461656)
chr5 (203-258)||(33677201-33677256)
chr5 (190-261)||(34186428-34186499)
chr5 (201-268)||(38404214-38404281)
chr5 (180-267)||(43585481-43585568)
chr5 (187-261)||(3709457-3709531)
chr5 (196-258)||(4417764-4417826)
chr5 (196-258)||(15966645-15966707)
chr5 (189-231)||(22512059-22512101)
chr5 (201-267)||(35469463-35469529)
chr5 (205-267)||(36329091-36329153)
chr5 (196-258)||(40914115-40914177)
chr5 (205-258)||(8408802-8408855)
chr5 (201-258)||(40271284-40271341)
chr5 (201-233)||(38507888-38507920)
chr5 (190-258)||(40208553-40208621)
[»] chr6 (20 HSPs)
chr6 (202-293)||(4156347-4156445)
chr6 (188-258)||(2693656-2693726)
chr6 (206-258)||(11213228-11213280)
chr6 (188-267)||(2693729-2693808)
chr6 (193-256)||(3212240-3212303)
chr6 (190-293)||(7246917-7247015)
chr6 (189-256)||(7498426-7498493)
chr6 (201-267)||(13902030-13902096)
chr6 (206-267)||(12291012-12291073)
chr6 (190-249)||(4156424-4156483)
chr6 (188-267)||(16865103-16865182)
chr6 (190-268)||(1858343-1858421)
chr6 (201-255)||(29938429-29938483)
chr6 (189-267)||(32364011-32364089)
chr6 (188-233)||(2343335-2343380)
chr6 (190-259)||(21478628-21478697)
chr6 (201-258)||(28542337-28542394)
chr6 (189-293)||(7246879-7246977)
chr6 (201-261)||(29318055-29318115)
chr6 (201-261)||(29938357-29938417)
[»] chr4 (33 HSPs)
chr4 (189-261)||(39294168-39294240)
chr4 (190-256)||(19911251-19911317)
chr4 (190-293)||(18592341-18592451)
chr4 (187-267)||(51394091-51394171)
chr4 (189-256)||(35003105-35003172)
chr4 (192-267)||(55616813-55616888)
chr4 (192-267)||(55624117-55624192)
chr4 (204-258)||(34100109-34100163)
chr4 (187-293)||(34595724-34595829)
chr4 (196-258)||(37252104-37252166)
chr4 (199-268)||(5048501-5048570)
chr4 (202-255)||(9802994-9803047)
chr4 (190-267)||(24156135-24156212)
chr4 (190-267)||(31914395-31914472)
chr4 (190-267)||(40545363-40545439)
chr4 (190-293)||(35003144-35003254)
chr4 (191-258)||(18327931-18327998)
chr4 (191-258)||(18437401-18437468)
chr4 (206-261)||(51545397-51545452)
chr4 (188-258)||(8014177-8014247)
chr4 (197-267)||(26206661-26206731)
chr4 (201-267)||(38616477-38616543)
chr4 (189-255)||(46495610-46495676)
chr4 (196-258)||(48472756-48472818)
chr4 (201-267)||(52164542-52164608)
chr4 (188-261)||(1945436-1945509)
chr4 (190-258)||(20540712-20540781)
chr4 (203-256)||(23795587-23795640)
chr4 (197-258)||(33659848-33659909)
chr4 (189-258)||(38224013-38224082)
chr4 (204-268)||(33032896-33032960)
chr4 (202-266)||(34100167-34100231)
chr4 (190-266)||(34166108-34166184)
[»] chr1 (30 HSPs)
chr1 (190-293)||(27146058-27146168)
chr1 (201-256)||(51245361-51245416)
chr1 (190-268)||(15285308-15285386)
chr1 (202-268)||(17387658-17387724)
chr1 (190-258)||(38847378-38847446)
chr1 (196-258)||(26856049-26856111)
chr1 (190-267)||(1358168-1358245)
chr1 (188-268)||(435272-435352)
chr1 (203-267)||(1344377-1344441)
chr1 (206-293)||(24286799-24286893)
chr1 (201-293)||(42468889-42468976)
chr1 (189-293)||(43147481-43147580)
chr1 (189-256)||(6792428-6792495)
chr1 (206-261)||(11994930-11994985)
chr1 (188-267)||(16426975-16427054)
chr1 (188-267)||(40907173-40907252)
chr1 (201-259)||(4683012-4683070)
chr1 (196-258)||(12062196-12062258)
chr1 (201-267)||(21852444-21852510)
chr1 (179-293)||(42468840-42468949)
chr1 (187-268)||(22954838-22954919)
chr1 (206-267)||(24015020-24015081)
chr1 (190-267)||(37215239-37215316)
chr1 (189-249)||(1344453-1344513)
chr1 (189-229)||(6169916-6169956)
chr1 (186-230)||(8552022-8552066)
chr1 (201-261)||(15401871-15401931)
chr1 (187-267)||(24023358-24023438)
chr1 (206-258)||(30785639-30785691)
chr1 (190-258)||(42788404-42788472)
[»] scaffold0121 (1 HSPs)
scaffold0121 (190-258)||(17510-17578)
[»] scaffold0136 (1 HSPs)
scaffold0136 (190-258)||(22520-22588)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 16382755 - 16382493
Alignment:
Q  9 agcacagagaaaatggaggaagtactactgaaagagtgcttactgatttgtatggaaggtccccagggtgcattgaacaacaacaattaaggtccctagc 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16382755 agcacagagaaaatggaggaagtactactgaaagagtgcttactgattagtatggaaggtccccacggtgcattgaacaacaacaattaaggtccctagc 16382656  T
Q  109 aactcacttatattactc-----ttttttgaa-ggtactctcatattactctcttcttcattacctcattttcccaatcatatgatatactctctccatt 202  Q
    |||| ||| |||||||||     ||||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||    
T  16382655 aacttactcatattactctctttttttttgaagggta--ctcatattactctcttcttcattacctcattttcccaatcgtatgatatacttcctccatt 16382558  T
Q  203 tttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||    
T  16382557 tttaaatataaataaaattgattttttaggtctatttatttaataatgtatgtggtccacattat 16382493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 36826959 - 36827059
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatg 286  Q
    |||||||| |||| |||||||||||||| |||||||| ||||||| || ||| |||||||||| ||||||||||     ||||| ||||||||||||||     
T  36826959 atatactccctccgtttttaaatataaacaaaattgattttttagttc-attcatttaatgatgtatgtggtcc-----atatacatcattaaatgaata 36827052  T
Q  287 aacctaa 293  Q
    |||||||    
T  36827053 aacctaa 36827059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 44872410 - 44872332
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||| |||| ||||||||||||||||||||||  |||||||||  ||||||||||| || ||||||||||| |||||    
T  44872410 atactccctccgtttttaaatataaataaaattggttttttaggttcatttatttaataatgtatgtggtccatattat 44872332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 35202020 - 35201954
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    ||||| |||| |||||||||||||  ||||||||||||||||||  ||| |||||||||||||||||    
T  35202020 tactccctccgtttttaaatataagcaaaattgaatttttaggttcattcatttaatgatatatgtg 35201954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 2827351 - 2827420
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||||| ||||||||||||| ||||||||| |||||| ||  ||| |||||||||| ||||||||    
T  2827351 atactctctccgtttttaaatataagtaaaattgactttttaagttcattcatttaatgatgtatgtggt 2827420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 16382421 - 16382490
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||| |||| ||||||||||||||||||||| | |||||||||  ||||||||||| |||||| ||||    
T  16382421 atactccctccgtttttaaatataaataaaattaattttttaggttcatttatttaataatatatatggt 16382490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 250
Target Start/End: Complemental strand, 29789897 - 29789837
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgata 250  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||  ||| |||||||||||    
T  29789897 tactccctccatgtttaaatataaataaaattgattttttaggttcattcatttaatgata 29789837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 255
Target Start/End: Original strand, 26191772 - 26191830
Alignment:
Q  197 tccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgt 255  Q
    ||||||||||||||||| ||||||| | |||||| || |||| ||||||||||||||||    
T  26191772 tccatttttaaatataagtaaaattaattttttaagtttattaatttaatgatatatgt 26191830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 3270579 - 3270636
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||||||| ||||||||| |||||||||  |||||||||||||| || |||||    
T  3270579 tttttaaatataagtaaaattgactttttaggttcatttatttaatgatgtacgtggt 3270636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 13832610 - 13832549
Alignment:
Q  197 tccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||  |||||||| ||||||| | ||||||||| ||||||||||||||| ||||||||    
T  13832610 tccatttcaaaatataagtaaaattcactttttaggtttatttatttaatgatgtatgtggt 13832549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 26492453 - 26492376
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| |||||||||||||| |||||| | |||||||||  ||| | |||||||| ||||||||||| |||||    
T  26492453 tactccctccgtttttaaatataaacaaaatttactttttaggttcattgaattaatgatgtatgtggtccatattat 26492376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 36827091 - 36827003
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaac 289  Q
    |||| |||||||||| || ||||||||| ||||||||| |||| |||||||||| ||| ||| ||||||     | ||||||||||||||||||    
T  36827091 ctccgtttttaaatagaagtaaaattgattttttaggtttattcatttaatgatgtatatggaccacat-----acatcattaaatgaatgaac 36827003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 41569508 - 41569575
Alignment:
Q  200 atttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||||||||| || |||||||||||||||||||  |||| ||||||||| |||||||| || ||||||    
T  41569508 atttttaaata-aagtaaaattgaatttttaggttcatttttttaatgatgtatgtggttcatattata 41569575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Complemental strand, 44838921 - 44838841
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||  ||||||||||||||||| ||||||||| ||||| | |  ||| | ||||||||||||||||| || |||||    
T  44838921 atatactccttccatttttaaatataagtaaaattgattttttggattcattcaattaatgatatatgtggttcatattat 44838841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 9421378 - 9421319
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcc 260  Q
    |||||||||||||| |||||| | |||| || | ||||||||||||||| ||||||||||    
T  9421378 tttttaaatataaacaaaattaacttttaagatttatttatttaatgatgtatgtggtcc 9421319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 33570651 - 33570584
Alignment:
Q  191 actctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| |||| |||| |||||||| ||||||| | |||||||||  |||||||||||||| ||||||||    
T  33570651 actccctccgttttaaaatataagtaaaattcactttttaggttcatttatttaatgatgtatgtggt 33570584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 26191907 - 26191845
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||| |||||||||||| |||||| | |||||||||   ||||||||||||| ||||||||    
T  26191907 ctccatatttaaatataaacaaaattaattttttaggttcgtttatttaatgatgtatgtggt 26191845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 42348740 - 42348802
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgat 249  Q
    |||||||  ||| |||| |||||||||||||||||||  ||||||||  ||||||||||||||    
T  42348740 atatacttcctctatttctaaatataaataaaattgaccttttaggttaatttatttaatgat 42348802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 293
Target Start/End: Original strand, 44081964 - 44082049
Alignment:
Q  205 taaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaacctaa 293  Q
    |||||||||  |||||||| |||||||||  ||| ||||||||||  ||||||||||   || ||| ||| ||||||||||||||||||    
T  44081964 taaatataagcaaaattgattttttaggttcattaatttaatgatgcatgtggtcca---tacatacatcgttaaatgaatgaacctaa 44082049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 44838767 - 44838841
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||||||  ||| |||||||||||||  |||||||| ||||||| | |||| | |||||||| |||||||||||    
T  44838767 atatactccatccgtttttaaatataagcaaaattgactttttagatttattcaattaatgatgtatgtggtcca 44838841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 8104517 - 8104452
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||| |||| |||||||| ||||| | | |||||||||  |||||||||||||| |||||||||||    
T  8104517 ctccgttttaaaatataagtaaaaataactttttaggttcatttatttaatgatgtatgtggtcca 8104452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 30245648 - 30245583
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgt 255  Q
    ||||| |||| |||| |||||||| ||||||| | |||||||||  |||||||||||||| |||||    
T  30245648 tactccctccgttttaaaatataagtaaaattcactttttaggttcatttatttaatgatgtatgt 30245583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 28435424 - 28435476
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||  |||||| | |||||||||  |||||||||||||||||||||||    
T  28435424 aaatataagcaaaattcattttttaggttcatttatttaatgatatatgtggt 28435476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 36308642 - 36308590
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||| ||||||| | |||||||||  |||||||||||||| ||||||||    
T  36308642 aaatataagtaaaattcactttttaggttcatttatttaatgatgtatgtggt 36308590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 8079489 - 8079411
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||| |||| ||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||    
T  8079489 atactccctccgtttttaaatataaataaaattgattttttaggtttatttatttaatgatgtatgtgatccacattat 8079411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 6006676 - 6006785
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacatt-------atatatatcattaaa 280  Q
    |||||||||||| ||||||||||||||||||||||| ||||||| |  ||| |||||||||| |||||||| || |||       |||||||||||||||    
T  6006676 tatactctctccgtttttaaatataaataaaattgactttttagattcattgatttaatgatgtatgtggtacatattatgaaccatatatatcattaaa 6006775  T
Q  281 tgaatgaacc 290  Q
    ||||||||||    
T  6006776 tgaatgaacc 6006785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 3463295 - 3463216
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    |||||| |||||| ||||||||||| ||||||||| |||||||||  ||| |||||||||| |||||| |||| ||||||    
T  3463295 atactccctccatctttaaatataagtaaaattgactttttaggttcattcatttaatgatgtatgtgatccatattata 3463216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 14394783 - 14394854
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||| ||||||||| |||||| | ||||||||| ||||||| ||||||| ||||||||||| |||||    
T  14394783 ctccattttaaaatataaacaaaattcattttttaggtttatttatctaatgatgtatgtggtccatattat 14394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 33052138 - 33052216
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||| |||| ||||| |||||||  |||||||| ||||||||| ||||||||||| ||| ||||||||||| ||||||    
T  33052138 tactccctccgttttttaatataagcaaaattgattttttaggtttatttatttaacgatgtatgtggtccatattata 33052216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 35797914 - 35797847
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    |||||| ||||||||||||||||||| |||||| | |||||| || |||||||||||||  |||||||    
T  35797914 atactccctccatttttaaatataaacaaaattaactttttaagtttatttatttaatgtcatatgtg 35797847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 4101943 - 4102009
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgt 255  Q
    |||||| |||| ||||||||||||| ||||||||| |||||||||  ||| |||||||||| |||||    
T  4101943 atactccctccgtttttaaatataagtaaaattgactttttaggttcattcatttaatgatgtatgt 4102009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 246
Target Start/End: Complemental strand, 10237735 - 10237678
Alignment:
Q  190 tactctctccatttttaaatataaa-taaaattgaatttttaggtctatttatttaat 246  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||||| |||| |||||||    
T  10237735 tactccctccatttttaaatataaagtaaaattgactttttaggtttattcatttaat 10237678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 18967219 - 18967288
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||| |||| | ||||||||||| ||||||||| ||||||| | |||| |||||||||| ||||||||    
T  18967219 atactccctccgtatttaaatataagtaaaattgattttttagatttattcatttaatgatgtatgtggt 18967288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 6006826 - 6006758
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||| ||||| ||||||||||||||||| ||||| |||  ||| |||||||||||||| ||||    
T  6006826 tactccctccgttttttaatataaataaaattgacttttttggttcattcatttaatgatatatatggt 6006758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 36396867 - 36396919
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||||||||| | ||||||||| |||| |||||||||| ||||||||    
T  36396867 aaatataaataaaattcactttttaggtttattcatttaatgatgtatgtggt 36396919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 19250252 - 19250181
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||| ||||||||||||| ||||||||  |||||||||  ||||||||||||||  ||||| |||| |||||    
T  19250252 ctccgtttttaaatataagtaaaattggctttttaggttcatttatttaatgatgaatgtgatccatattat 19250181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 28602278 - 28602223
Alignment:
Q  203 tttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||||||||||||| | |||||| ||  ||| |||||||||||||||||||    
T  28602278 tttaaatataaataaaatttactttttaagttcattcatttaatgatatatgtggt 28602223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 42230667 - 42230588
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    |||||| |||| ||||| |||||||  |||||||| |||||| ||  ||| |||||||||| ||||||||||| ||||||    
T  42230667 atactccctccgttttttaatataagcaaaattgactttttatgttcattcatttaatgatgtatgtggtccatattata 42230588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 293
Target Start/End: Complemental strand, 44949485 - 44949376
Alignment:
Q  191 actctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatga 283  Q
    |||| |||| |||||||||||||  |||||| | |||||| ||  ||| |||||||||| ||||||||||| |||||       ||| ||||||||||||    
T  44949485 actccctccgtttttaaatataagcaaaatttattttttaagttcattcatttaatgatgtatgtggtccatattattaaccacatacatcattaaatga 44949386  T
Q  284 atgaacctaa 293  Q
    ||||||||||    
T  44949385 atgaacctaa 44949376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 5144396 - 5144334
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||||||||||| || | |||||||||  ||||| |||||||| ||||||||||| ||||||    
T  5144396 aaatataaataaattttactttttaggttcatttaattaatgatgtatgtggtccatattata 5144334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 29573960 - 29573890
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||  ||| ||||||||||||| ||||| ||| |||||||||  ||||| |||||||| ||||||||    
T  29573960 tatactccatccgtttttaaatataagtaaaagtgattttttaggttcatttaattaatgatgtatgtggt 29573890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 4032741 - 4032684
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| ||||||||| |||||| | ||||||| | ||||||||||||||| ||||||||    
T  4032741 ttttaaaatataaaaaaaatttattttttagatttatttatttaatgatgtatgtggt 4032684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 5717875 - 5717924
Alignment:
Q  197 tccatttttaaatataaataaaattgaatttttaggtctatttatttaat 246  Q
    ||||||||||||||||| ||||||||| |||||| || |||||| |||||    
T  5717875 tccatttttaaatataagtaaaattgattttttatgtttatttaattaat 5717924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 11160517 - 11160440
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||||||||||||||||| ||||| | | |||||||||  ||| |||| ||||| |||||||| || |||||    
T  11160517 tactccctccatttttaaatataagtaaaaattactttttaggttcattcatttgatgatgtatgtggttcatattat 11160440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 18967368 - 18967291
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| ||||||||||||| ||||||||| |||||  ||  ||| |||||||||| ||| ||||||| |||||    
T  18967368 tactccctccgtttttaaatataactaaaattgactttttttgttcattcatttaatgatgtatttggtccatattat 18967291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 21209036 - 21208959
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| |||| ||||||||  |||||| | |||||||||  ||| |||||||||| ||||||||||| |||||    
T  21209036 tactccctccgttttaaaatataagcaaaattcactttttaggttcattcatttaatgatgtatgtggtccatattat 21208959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 33363704 - 33363635
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||| |||| | |||||||||||  |||||||| |||||||||  ||| |||||||||| ||||||||    
T  33363704 atactccctccgtctttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggt 33363635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 4184852 - 4184792
Alignment:
Q  207 aatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||  |||||||| |||||||||  ||| |||||||||| ||||||||||| |||||    
T  4184852 aatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggtccatattat 4184792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 5773922 - 5773854
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||||| ||| ||||||| ||||||||| |||||| ||  |||||||||||||| ||| ||||    
T  5773922 tactccctccatattttaatataagtaaaattgactttttaagttcatttatttaatgatgtatatggt 5773854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 10237597 - 10237665
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||| | ||||||||||| ||||||||| |||||||||  ||| ||||||| || ||||||||    
T  10237597 tactcactccgtctttaaatataagtaaaattgactttttaggttcattcatttaataatgtatgtggt 10237665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 12017885 - 12017793
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaacctaa 293  Q
    ||||||||| |||  |||||||| ||||||| |  ||| |||| ||||| ||||||||||||||    || ||||||||||||||||| ||||    
T  12017885 tttttaaatgtaagcaaaattgactttttagattcattcatttgatgatgtatgtggtccacatacagtacatcattaaatgaatgaatctaa 12017793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 20556730 - 20556662
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||| |||| ||||||||  |||||||| |||||||||  ||| ||||||| |||||||||||    
T  20556730 tactccctccgttttcaaatataagcaaaattgattttttaggttcattcatttaataatatatgtggt 20556662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 25899485 - 25899425
Alignment:
Q  207 aatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||| ||||||| | |||||| ||  ||||||||||||||||||||||| || |||||    
T  25899485 aatataagtaaaattcactttttatgttcatttatttaatgatatatgtggttcatattat 25899425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 32514863 - 32514923
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgat 249  Q
    |||||| |||| | ||| ||||||||||||||||| |||||||||  ||| ||||||||||    
T  32514863 atactccctccgtattttaatataaataaaattgattttttaggttcattcatttaatgat 32514923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 38262118 - 38262026
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaacctaa 293  Q
    |||||||||||||  ||| || | |||||||||  ||| | |||||||| |||||| |||| || | ||| |||||||| |||||||||||||    
T  38262118 tttttaaatataagcaaattttattttttaggttcattcaattaatgatgtatgtgatccatatcacatacatcattaattgaatgaacctaa 38262026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 42270129 - 42270049
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    |||||| ||||| |||||||||||||| |||||| | |||||||||   || | | |||||||||||| ||||| ||||||    
T  42270129 tatactatctccgtttttaaatataaacaaaatttactttttaggttctttgaataaatgatatatgtcgtccatattata 42270049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 45095518 - 45095589
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    |||| |||||||||||||| ||| || | |||||||||  ||| | |||||||| ||||||||||||||||||    
T  45095518 ctccgtttttaaatataaacaaatttta-tttttaggttcattcaattaatgatgtatgtggtccacattata 45095589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 42061776 - 42061868
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaacctaa 293  Q
    ||||||||||||| ||||||||| |||||||||  |||||||||||||||||| ||||||| |  ||||| |||||||||| |||||||||||    
T  42061776 tttttaaatataagtaaaattgactttttaggttcatttatttaatgatatatatggtccataccatatacatcattaaataaatgaacctaa 42061868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 26153910 - 26154021
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaat 281  Q
    |||||| |||| ||||| |||||||| |||||||| |||||||||  ||| |||||||||| ||||||||||| |||||       ||| ||||||||||    
T  26153910 atactccctccgttttttaatataaacaaaattgactttttaggttcattaatttaatgatgtatgtggtccatattatgaatcacatacatcattaaat 26154009  T
Q  282 gaatgaacctaa 293  Q
    ||||||||||||    
T  26154010 gaatgaacctaa 26154021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 25250295 - 25250235
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    |||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||| ||||||    
T  25250295 ctccgtttttaaatataagtaaaattgactttttaggtttatttatttaatgatgtatgtg 25250235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 12307822 - 12307878
Alignment:
Q  199 catttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgt 255  Q
    ||||||||||||||||||||||||| ||||||| |  |||||||||||||| |||||    
T  12307822 catttttaaatataaataaaattgactttttagattcatttatttaatgatgtatgt 12307878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 31669912 - 31669829
Alignment:
Q  205 taaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaacctaa 293  Q
    ||||||||| ||||||||| |||||||||  ||||||||||| || ||||||| ||||||     | ||||||||||||||||||||||    
T  31669912 taaatataagtaaaattgactttttaggttcatttatttaattatgtatgtggaccacat-----acatcattaaatgaatgaacctaa 31669829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 5212188 - 5212089
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaa 288  Q
    |||||| |||| |||| |||||||| ||||||| | |||||||||  ||| |||||||||| |||||||| |||||     | |||||||||||||||||    
T  5212188 atactccctccgttttaaaatataagtaaaattcactttttaggttcattcatttaatgatgtatgtggttcacat-----acatcattaaatgaatgaa 5212094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 28324716 - 28324822
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatg 282  Q
    ||||| |||| ||| |||||||||  ||||||||||||||| ||  ||| |||||||||| |||||||| || |||||       |||||||||||||||    
T  28324716 tactccctccgtttctaaatataagcaaaattgaatttttatgttcattcatttaatgatgtatgtggttcatattatggatcacatatatcattaaatg 28324815  T
Q  283 aatgaac 289  Q
    |||||||    
T  28324816 aatgaac 28324822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 41699183 - 41699131
Alignment:
Q  207 aatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtc 259  Q
    |||||||| ||||||||||||||||||  ||| |||||||||| |||||||||    
T  41699183 aatataaacaaaattgaatttttaggttcattcatttaatgatgtatgtggtc 41699131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 268
Target Start/End: Complemental strand, 21907328 - 21907249
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    |||||| |||| | |||||||||||| |||||||| |||||||||  ||| |||| ||||| |||||||| || ||||||    
T  21907328 atactccctccgtctttaaatataaacaaaattgactttttaggttaattcattttatgatgtatgtggttcatattata 21907249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 249
Target Start/End: Original strand, 24936677 - 24936736
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgat 249  Q
    |||||||||| |||||||||||||  |||||||| ||||||| |  ||||||||||||||    
T  24936677 tactctctccgtttttaaatataagcaaaattgattttttagattcatttatttaatgat 24936736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 31857199 - 31857140
Alignment:
Q  205 taaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacat 264  Q
    |||||||||  |||||||| |||||||||  ||||||||||| || ||||||||||||||    
T  31857199 taaatataagcaaaattgactttttaggttcatttatttaataatgtatgtggtccacat 31857140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 4027365 - 4027303
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgat 249  Q
    ||||||||  ||| |||||||||||||  ||||||||||||||||||  ||| ||||||||||    
T  4027365 atatactccatccgtttttaaatataagcaaaattgaatttttaggttcattcatttaatgat 4027303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 26743255 - 26743193
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| ||||||||||||| ||||||||| |||||| ||  ||| |||||||||| ||||||||    
T  26743255 ctccgtttttaaatataagtaaaattgactttttaagttcattcatttaatgatgtatgtggt 26743193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 248
Target Start/End: Original strand, 42644077 - 42644135
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatga 248  Q
    |||||||||| | ||||||||||| ||||||||| |||||||||  |||| ||||||||    
T  42644077 tactctctccgtctttaaatataagtaaaattgactttttaggttcatttctttaatga 42644135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 24166259 - 24166336
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||||||| |||||||||  |||||||| |||||| ||  ||| | ||||||||||||||||| || |||||    
T  24166259 tactccctccatttctaaatataagcaaaattgactttttaagttcattcaattaatgatatatgtggttcatattat 24166336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 31857028 - 31857097
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||| |||| | |||||||||||  |||||||| |||||| ||  |||||||||||||| ||||||||    
T  31857028 atactccctccgtctttaaatataatcaaaattgattttttaagttcatttatttaatgatgtatgtggt 31857097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 34118345 - 34118422
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| | |||||| ||||  |||||||| |||||||||  |||||||||| ||| ||||||||||| |||||    
T  34118345 tactccctccgtatttaaaaataagcaaaattgactttttaggttgatttatttaacgatgtatgtggtccatattat 34118422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 233
Target Start/End: Original strand, 41103114 - 41103151
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggt 233  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  41103114 ctccatttttaaatataagtaaaattgactttttaggt 41103151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 5082671 - 5082743
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||||| |||| | |||||||||||  |||||||| |||||| ||  ||| |||||||||| |||||||||||    
T  5082671 atactccctccgtctttaaatataagcaaaattgactttttaagttcattcatttaatgatgtatgtggtcca 5082743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 28324849 - 28324793
Alignment:
Q  205 taaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||||||||  ||||||||||||||| ||  ||| ||||||||||||||||| ||||    
T  28324849 taaatataagcaaaattgaatttttatgttcattcatttaatgatatatgtgatcca 28324793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Original strand, 30005869 - 30005941
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtc 259  Q
    |||||||| |||| ||||||||||||| ||||||||| ||||| |||  ||| | |||||||  |||||||||    
T  30005869 atatactccctccgtttttaaatataagtaaaattgacttttttggttcattcaattaatgacgtatgtggtc 30005941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 36711683 - 36711615
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||| |||||||||||||||||| || | |||| ||||  ||| | |||||||||||||||||    
T  36711683 tactccctccgtttttaaatataaataaattttacttttaaggttcattcaattaatgatatatgtggt 36711615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 37740083 - 37740012
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||| ||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||| |||||    
T  37740083 ctccgtttttaaatataagtaaaattgattttttaggttgatttatttaatgatatatgtggtccatattat 37740012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 293
Target Start/End: Original strand, 32956411 - 32956524
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca-------cattatatatatcattaa 279  Q
    |||||||  |||| |||||||||||||  |||||||| |||||||||  |||||||||||||| |||||||||||        |||||||||||||||||    
T  32956411 atatacttcctccgtttttaaatataagcaaaattgactttttaggttcatttatttaatgatgtatgtggtccatattattaattatatatatcattaa 32956510  T
Q  280 atgaatgaacctaa 293  Q
    ||||||||| ||||    
T  32956511 atgaatgaatctaa 32956524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 39333286 - 39333396
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatg 282  Q
    ||||| |||| |||| ||||||||  |||||| | |||||||||  |||||||||||||||||||||||||| |||||       ||| |||||||||||    
T  39333286 tactccctccgttttaaaatataagcaaaattcattttttaggttcatttatttaatgatatatgtggtccatattatgaaccacatacatcattaaatg 39333385  T
Q  283 aatgaacctaa 293  Q
    |||||||||||    
T  39333386 aatgaacctaa 39333396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 267
Target Start/End: Original strand, 1927489 - 1927574
Alignment:
Q  182 atatgatatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||| ||||||||||||| ||| ||||||||| ||||||| | |||||| ||  ||| |||||||||| ||||||||||| |||||    
T  1927489 atataatatactctctccgtttctaaatataagtaaaatttattttttaagttcattcatttaatgatgtatgtggtccatattat 1927574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 25990644 - 25990755
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaat 281  Q
    |||||| |||| ||||||||||||   |||||||| |||||||||| ||| |||||||||| ||||||||| | |||||       ||| ||||||||||    
T  25990644 atactccctccgtttttaaatatatgcaaaattgactttttaggtcaattcatttaatgatgtatgtggtctatattatgaaccacatacatcattaaat 25990743  T
Q  282 gaatgaacctaa 293  Q
    ||||||||||||    
T  25990744 gaatgaacctaa 25990755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 7680257 - 7680186
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||| |||||||| ||||||| | |||||||||  ||| |||||||||| ||||||||||| |||||    
T  7680257 ctccattttaaaatataagtaaaattcactttttaggttcattcatttaatgatgtatgtggtccatattat 7680186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 29352875 - 29352804
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||| |||| ||||||||||||| ||||||| | |||||||||  ||| |||||||||| ||||||||    
T  29352875 atatactccctccgtttttaaatataagtaaaatttattttttaggttcattcatttaatgatgtatgtggt 29352804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 39975234 - 39975159
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| ||||||||||||| ||||| |||  ||||| || ||||||||||||||| ||||||||||| |||||    
T  39975234 tactccctccgtttttaaatataagtaaaaatga--ttttaagtttatttatttaatgatgtatgtggtccatattat 39975159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 40326434 - 40326512
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||| |||||||||||||||||||||||||||| ||||| | |  ||| | |||||||| |||||||| || ||||||    
T  40326434 tactccctccatttttaaatataaataaaattgacttttttgattcattcaattaatgatgtatgtggttcatattata 40326512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 1676265 - 1676334
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||| | ||||||||||||||||||||||| ||||||| |  ||| | ||||| |||||||||||    
T  1676265 atactctcttcgtttttaaatataaataaaattgactttttagattcattcacttaataatatatgtggt 1676334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 17940183 - 17940285
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaa 288  Q
    |||||| |||| |||||||||||||  |||||| | |||||||||  ||| |||||||||| ||||||||  ||   | ||| |||||||||||||||||    
T  17940183 atactccctccgtttttaaatataagcaaaatttactttttaggttcattcatttaatgatgtatgtggtggac--cacatacatcattaaatgaatgaa 17940280  T
Q  289 cctaa 293  Q
    |||||    
T  17940281 cctaa 17940285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 293
Target Start/End: Complemental strand, 17940308 - 17940222
Alignment:
Q  205 taaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaacctaa 293  Q
    |||||||||  |||||| | |||||||||  ||| |||||||||| ||||||||||||   | ||| ||||||||||||||||||||||    
T  17940308 taaatataagcaaaatttactttttaggttcattcatttaatgatgtatgtggtccac--cacatacatcattaaatgaatgaacctaa 17940222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 293
Target Start/End: Original strand, 42790890 - 42790989
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatgaatgaacctaa 293  Q
    |||||||||||||| |||| |||||||||||||  ||| ||||||| ||||||||| | || |||||       ||| ||||||||||||||||||||||    
T  42790890 tttttaaatataaacaaaaatgaatttttaggttcattcatttaataatatatgtgatacatattattaaccacatacatcattaaatgaatgaacctaa 42790989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 24312557 - 24312637
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||| | |||| ||| |||||||||| |||||| | ||||||| | |||| |||||||||||||| ||||||| |||||    
T  24312557 atatacaccctccctttataaatataaacaaaatttactttttagatttattcatttaatgatatatatggtccatattat 24312637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 29352736 - 29352834
Alignment:
Q  202 ttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatgaatgaacctaa 293  Q
    ||||||||||||  |||||||| |||||||||  ||||||||||| || |||||| |||| |||||       ||| ||||||||||||||||||||||    
T  29352736 ttttaaatataagcaaaattgactttttaggttcatttatttaataatgtatgtgatccatattattaaccacatacatcattaaatgaatgaacctaa 29352834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 43884007 - 43883939
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||| ||||||||||||||||||||| | |||||||||  ||| || ||||||| ||||||||    
T  43884007 tactccctccgtttttaaatataaataaaattaactttttaggttcattcatctaatgatgtatgtggt 43883939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 51486433 - 51486493
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||||||||||||  |||||||| |||||||||  ||| | ||||||||||||||||||||    
T  51486433 tttttaaatataagcaaaattgactttttaggttcattcaattaatgatatatgtggtcca 51486493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 54008351 - 54008241
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacatt-------atatatatcattaaatg 282  Q
    ||||| |||| |||||||||||||  |||||||| |||||||||  ||| |||||||||| ||| ||||||| |||       | ||| |||||||||||    
T  54008351 tactccctccgtttttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatatggtccatattgttaaccacatacatcattaaatg 54008252  T
Q  283 aatgaacctaa 293  Q
    |||||||||||    
T  54008251 aatgaacctaa 54008241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 16894314 - 16894243
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||| |||| |||||||||||||| |||||||| ||||||| | |||| | |||||||| |||||| ||||    
T  16894314 tactccctccgtttttaaatataaacaaaattgactttttagatttattcaattaatgatgtatgtgatcca 16894243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 17004954 - 17005025
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||| |||| |||||||||||||  |||||||| |||||||||  ||| | |||||||| |||||||||||    
T  17004954 tactccctccgtttttaaatataagcaaaattgattttttaggttcattcaattaatgatgtatgtggtcca 17005025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 24226333 - 24226282
Alignment:
Q  207 aatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||| |||||||| |||||||||  |||||||||||||| ||||||||    
T  24226333 aatataaacaaaattgactttttaggttcatttatttaatgatgtatgtggt 24226282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 256
Target Start/End: Complemental strand, 28811655 - 28811592
Alignment:
Q  193 tctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    ||||||| | ||||||||||| ||||||||| |||||||||  ||| |||||||||| ||||||    
T  28811655 tctctccgtctttaaatataagtaaaattgattttttaggttcattcatttaatgatgtatgtg 28811592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 29726285 - 29726352
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    |||||| |||||| |||||||||||  |||||||| |||||||||  ||| |||||||||| ||||||    
T  29726285 atactccctccatgtttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtg 29726352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 33639058 - 33638987
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||| |||| |||||||||||||  |||||| | |||||||||  ||| |||||||||| |||||||||||    
T  33639058 tactccctccgtttttaaatataagcaaaattcactttttaggttcattcatttaatgatgtatgtggtcca 33638987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 258
Target Start/End: Complemental strand, 37331730 - 37331675
Alignment:
Q  203 tttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||||  |||||||| |||||||||  |||||||||||||| ||||||||    
T  37331730 tttaaatataagcaaaattgactttttaggttcatttatttaatgatgtatgtggt 37331675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 48909180 - 48909101
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||| |||| |||| ||||||||  |||||| | |||||||||  |||||||||| ||| ||||||||||| |||||    
T  48909180 tatactccctccgttttaaaatataagcaaaattcactttttaggttcatttatttaacgatgtatgtggtccatattat 48909101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 261
Target Start/End: Original strand, 34935531 - 34935605
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||||||||||| |||||||||||||  ||| || | |||||||||  ||| | |||||||| |||||||||||    
T  34935531 atatactctctccgtttttaaatataagcaaattttactttttaggttcattcaattaatgatgtatgtggtcca 34935605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 7328780 - 7328719
Alignment:
Q  197 tccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||||||||||  |||||||| |||||||||  ||| |||||||||| ||||||||    
T  7328780 tccatctttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggt 7328719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 25995687 - 25995618
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||| |||| |||||||||||||  ||| |||| |||||||||  ||| |||||||||| ||||||||    
T  25995687 atactccctccgtttttaaatataagcaaatttgactttttaggttcattcatttaatgatgtatgtggt 25995618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 13084178 - 13084118
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||| |||| || ||||||||| ||||||| |  ||| ||||||||||||||||||||||    
T  13084178 ttttttaatacaagtaaaattgactttttagattcattcatttaatgatatatgtggtcca 13084118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 29076527 - 29076587
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    |||| ||||||||||||| |||||||||  ||||||||  ||| | |||||||||||||||    
T  29076527 ctccgtttttaaatataagtaaaattgatcttttaggttcattcaattaatgatatatgtg 29076587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 29076670 - 29076598
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||||| |||||||| |||||||||  |||||||| ||||||| |  ||| | |||||||| |||||||||||    
T  29076670 atactccctccatttctaaatataagcaaaattgactttttagattcattcaattaatgatgtatgtggtcca 29076598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 231
Target Start/End: Original strand, 53753823 - 53753867
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttag 231  Q
    |||||||| | ||||||||||||||||| |||||||| |||||||    
T  53753823 atatactccccccatttttaaatataaacaaaattgactttttag 53753867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 39)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 190 - 268
Target Start/End: Original strand, 22473934 - 22474012
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||| |||||||||||||||||||||||||||| |||||||||  |||||||||||||| || || ||||| ||||||    
T  22473934 tactccctccatttttaaatataaataaaattgactttttaggttcatttatttaatgatgtacgtagtccatattata 22474012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 5089591 - 5089520
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||| ||||||||||||||||||||||| ||||||| | |||| |||||||||| ||||||||||| |||||    
T  5089591 ctccgtttttaaatataaataaaattgattttttagatttattcatttaatgatgtatgtggtccatattat 5089520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 5787626 - 5787545
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||||||| ||| | |||||||||||  ||||||||||||||||||  |||||||||||||| ||| ||||||| ||||||    
T  5787626 atatactctatccgtctttaaatataagcaaaattgaatttttaggttcatttatttaatgatgtatctggtccatattata 5787545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 32146822 - 32146933
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaat 281  Q
    ||||||||||| |||||||||||||  |||||| | |||||||||  |||||||||||||| || |||||||| |||||       ||| ||||||||||    
T  32146822 atactctctccgtttttaaatataagcaaaatttactttttaggttcatttatttaatgatgtacgtggtccatattattaaccacatacatcattaaat 32146921  T
Q  282 gaatgaacctaa 293  Q
    ||||||||||||    
T  32146922 gaatgaacctaa 32146933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 293
Target Start/End: Complemental strand, 40914244 - 40914147
Alignment:
Q  203 tttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatgaatgaacctaa 293  Q
    |||||||||||  |||||||| |||||||||  |||||||||||||| ||||||||||| |||||       |||||| |||||||||||||||||||    
T  40914244 tttaaatataagcaaaattgactttttaggttcatttatttaatgatgtatgtggtccatattataaaccacatatataattaaatgaatgaacctaa 40914147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 6205213 - 6205143
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtc 259  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||  ||| ||||||| || |||||||||    
T  6205213 atactctctccatttttaaatataaataaatatgattttttaggttcattcatttaataatgtatgtggtc 6205143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 8694629 - 8694559
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||| |||| ||| |||||||||| |||||||| |||||||||  |||||||||||||| ||||||||    
T  8694629 tatactccctccgtttctaaatataaacaaaattgactttttaggttcatttatttaatgatgtatgtggt 8694559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 16018505 - 16018566
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgat 249  Q
    |||||||| |||||||||||||||||| ||||||||| |||||||||  ||||||||||||||    
T  16018505 atatactc-ctccatttttaaatataagtaaaattgactttttaggttcatttatttaatgat 16018566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 6205075 - 6205132
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||||||  |||||||| ||||||||| |||||||||||||||| |||||||    
T  6205075 tttttaaatataagaaaaattgattttttaggtttatttatttaatgatacatgtggt 6205132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 15966781 - 15966716
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||| ||||||||||||||||||||||| |||||||||  ||| | |||||||| |||||||||||    
T  15966781 ctccgtttttaaatataaataaaattgactttttaggttcattcaattaatgatgtatgtggtcca 15966716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 293
Target Start/End: Complemental strand, 25714007 - 25713906
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatga 287  Q
    |||||||||||| |||  ||||||||  |||||| |||||||||||  ||| ||||||| || |||||||| || |    ||||||||||||||||||||    
T  25714007 tatactctctccgtttcaaaatataagcaaaattcaatttttaggttcattcatttaataatgtatgtggttcata----atatatcattaaatgaatga 25713912  T
Q  288 acctaa 293  Q
    ||||||    
T  25713911 acctaa 25713906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 15475986 - 15475916
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||| ||| |||||||| |||||  ||||||||||||||| ||  ||| |||||||||||||||||||    
T  15475986 tatactccctctatttttaactataagcaaaattgaatttttaagttcattcatttaatgatatatgtggt 15475916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 267
Target Start/End: Complemental strand, 23042107 - 23042029
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||||| |||||||||||||  |||||| | |||||||||  ||| | |||||||| ||||||||||| |||||    
T  23042107 atactctctccgtttttaaatataagcaaaatttactttttaggttcattgaattaatgatgtatgtggtccatattat 23042029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 9087639 - 9087582
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||||||  |||||||| |||||||||  |||||||||||||| ||||||||    
T  9087639 tttttaaatataagcaaaattgactttttaggttcatttatttaatgatgtatgtggt 9087582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 13359157 - 13359234
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| ||||| |||||||  |||||||| |||||||||  ||| |||||||||| ||||||||||| |||||    
T  13359157 tactccctccgttttttaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggtccatattat 13359234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 267
Target Start/End: Original strand, 14064802 - 14064883
Alignment:
Q  186 gatatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||| |||| ||||||||||||| |||| || | |||||||||  ||| | |||||||| ||||||||||| |||||    
T  14064802 gatatactccctccgtttttaaatataagtaaattttactttttaggttcattcaattaatgatgtatgtggtccatattat 14064883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 31759001 - 31758902
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatgaatgaacctaa 293  Q
    |||||||||||||  |||||||  |||||||||  ||| |||||||||||||||| ||||| |||||       ||| ||||||||||||||||||||||    
T  31759001 tttttaaatataagcaaaattggctttttaggttcattcatttaatgatatatgtagtccatattatgaacaacatacatcattaaatgaatgaacctaa 31758902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 37039837 - 37039768
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||| |||| |||||||||||||  |||||| |||||||||||  ||| |||||||||| ||||||||    
T  37039837 atactccctccgtttttaaatataagcaaaattaaatttttaggttcattcatttaatgatgtatgtggt 37039768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 38404143 - 38404208
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatg 254  Q
    |||||| |||| | ||||||||||| ||||||||| |||||||||  |||||||||||||| ||||    
T  38404143 atactccctccgtctttaaatataagtaaaattgattttttaggttcatttatttaatgatgtatg 38404208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 7275465 - 7275413
Alignment:
Q  215 taaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||| |||||||||  ||| |||||||||||||||||||||| |||||    
T  7275465 taaaattgactttttaggttcattcatttaatgatatatgtggtccatattat 7275413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 8468493 - 8468429
Alignment:
Q  197 tccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||||||||||||||||||||||  |  ||||||||  ||| |||||||||| |||||||||||    
T  8468493 tccatttttaaatataaataaaatgaacattttaggttcattcatttaatgatgtatgtggtcca 8468429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 23117497 - 23117545
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgat 249  Q
    ||||||||||||| ||||||||| |||||||||  ||||||||||||||    
T  23117497 tttttaaatataagtaaaattgactttttaggttcatttatttaatgat 23117545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 36414846 - 36414794
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||| |||||| | ||||||||| ||||||||||||||| ||||||||    
T  36414846 aaatataaacaaaattcattttttaggtttatttatttaatgatgtatgtggt 36414794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 293
Target Start/End: Original strand, 13461559 - 13461656
Alignment:
Q  203 tttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatgaatgaacctaa 293  Q
    |||||||||||  |||||||| |||||||||  ||| |||||||||| |||||||| || |||||       ||| ||||||||||||||||||||||    
T  13461559 tttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggttcatattatgaaccacatacatcattaaatgaatgaacctaa 13461656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 33677201 - 33677256
Alignment:
Q  203 tttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||||| ||||||||||||||||| |  |||||||||||||| | ||||||    
T  33677201 tttaaatataagtaaaattgaatttttagattcatttatttaatgatgtttgtggt 33677256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 34186499 - 34186428
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||| |||| |||||||||||||  |||||||| |||||||||  ||| | |||||||| |||||||||||    
T  34186499 tactccctccgtttttaaatataagcaaaattgagtttttaggttcattcaattaatgatgtatgtggtcca 34186428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 201 - 268
Target Start/End: Complemental strand, 38404281 - 38404214
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    |||| ||||||||  |||||||| |||||||||  ||| |||||||||| ||||||||||| ||||||    
T  38404281 ttttaaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggtccatattata 38404214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 267
Target Start/End: Original strand, 43585481 - 43585568
Alignment:
Q  180 tcatatgatatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||| |||||||| |||| |||||||||||||| ||| || | |||||||||  ||| | |||||||| |||||||| || |||||    
T  43585481 tcatattatatactccctccgtttttaaatataaacaaattttactttttaggttcattcaattaatgatgtatgtggttcatattat 43585568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 3709531 - 3709457
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||||||  ||| ||| |||||||||  |||||||| |||||||||  ||| |||||||||| |||||||||||    
T  3709531 atatactcaatccgtttctaaatataagcaaaattgattttttaggttcattcatttaatgatgtatgtggtcca 3709457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 4417764 - 4417826
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| ||||||||||| ||||||| | | |||||||||  |||||||||||||| ||||||||    
T  4417764 ctccgtttttaaatatgaataaaaatcattttttaggttcatttatttaatgatgtatgtggt 4417826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 15966645 - 15966707
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||||||||||| ||||||| | |||||||||  ||| | |||||||| ||||||||    
T  15966645 ctccatttttaaatataagtaaaattaactttttaggttcattcaattaatgatgtatgtggt 15966707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 22512059 - 22512101
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttag 231  Q
    |||||||||||||||||||||||||  |||||||| |||||||    
T  22512059 atactctctccatttttaaatataagcaaaattgattttttag 22512101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 35469529 - 35469463
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||  |||||||| |||||| ||  ||| |||||||||| ||||||||||| |||||    
T  35469529 tttttaaatataagcaaaattgactttttacgttcattcatttaatgatgtatgtggtccatattat 35469463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 267
Target Start/End: Original strand, 36329091 - 36329153
Alignment:
Q  205 taaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||| |||| |||||||||  ||| | ||||||||||||||||| || |||||    
T  36329091 taaatataaataaatttgattttttaggttcattcaattaatgatatatgtggttcatattat 36329153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 40914115 - 40914177
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||| |||||||  |||||||| |||||||||  ||| ||||||| |||||||||||    
T  40914115 ctccattttttaatataagcaaaattgactttttaggttcattcatttaattatatatgtggt 40914177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 8408802 - 8408855
Alignment:
Q  205 taaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||  |||||||| |||||||||  ||| |||||||||||||||||||    
T  8408802 taaatataagcaaaattgattttttaggttcattcatttaatgatatatgtggt 8408855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 40271284 - 40271341
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||||||  |||||||| || ||||||  |||||||||||||| ||||||||    
T  40271284 tttttaaatataagcaaaattgagttgttaggttcatttatttaatgatgtatgtggt 40271341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 38507888 - 38507920
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggt 233  Q
    ||||||||||||||||||||||| |||||||||    
T  38507888 tttttaaatataaataaaattgattttttaggt 38507920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 40208621 - 40208553
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||||||| ||||||||| |||| || | |||||| || |||| | |||||||||||||||||    
T  40208621 tactccctccatttctaaatataagtaaattttactttttaagtttattcaattaatgatatatgtggt 40208553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 293
Target Start/End: Original strand, 4156347 - 4156445
Alignment:
Q  202 ttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata-------tatatcattaaatgaatgaacctaa 293  Q
    |||||||||||| ||||||||| |||||||||  ||| |||||||||| ||||||||||| ||||||       || ||||||||||||||||||||||    
T  4156347 ttttaaatataagtaaaattgactttttaggttcattcatttaatgatgtatgtggtccatattataaatcatgtacatcattaaatgaatgaacctaa 4156445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 2693656 - 2693726
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||| ||| | ||||||||||| ||||||||| |||||||||  |||||||||||||| ||||||||    
T  2693656 tatactctttccgtctttaaatataagtaaaattgactttttaggttcatttatttaatgatgtatgtggt 2693726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 11213228 - 11213280
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||||||||| | ||||||||| ||||||||||||||| ||||||||    
T  11213228 aaatataaataaaattcactttttaggtttatttatttaatgatgtatgtggt 11213280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 2693808 - 2693729
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||| |||||||||||||  |||||  | |||||||||  ||| |||||||||| ||||||||||| |||||    
T  2693808 tatactctctccgtttttaaatataagcaaaatctactttttaggttcattcatttaatgatgtatgtggtccatattat 2693729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 256
Target Start/End: Original strand, 3212240 - 3212303
Alignment:
Q  193 tctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    ||||||| ||||||||||||| |||||||||||||||||||  ||| | |||||||| ||||||    
T  3212240 tctctccgtttttaaatataagtaaaattgaatttttaggttcattcaattaatgatgtatgtg 3212303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 7247015 - 7246917
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaac 289  Q
    |||| ||||| ||||||||||||||||||||| | |||||||||  ||| | ||||| |||||||||| ||||||     | |||||||| |||||||||    
T  7247015 tactatctccgtttttaaatataaataaaattaattttttaggttcattcaattaataatatatgtggaccacat-----acatcattaattgaatgaac 7246921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 7498426 - 7498493
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    |||||| |||| ||||||||||||| ||||||||| |||||||||  ||| |||||||||| ||||||    
T  7498426 atactccctccgtttttaaatataagtaaaattgactttttaggttcattcatttaatgatgtatgtg 7498493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 13902030 - 13902096
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||  |||||||| |||||||||  ||| |||||||||| ||||||||||| |||||    
T  13902030 tttttaaatataagcaaaattgactttttaggttcattaatttaatgatgtatgtggtccatattat 13902096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 206 - 267
Target Start/End: Complemental strand, 12291073 - 12291012
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||  |||||| | ||||||||| ||||||||||||||| ||||||||||| |||||    
T  12291073 aaatataagcaaaattcattttttaggtttatttatttaatgatgtatgtggtccatattat 12291012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 4156483 - 4156424
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgat 249  Q
    ||||| ||||||||||||||||||  |||||||| |||||||||  ||| ||||||||||    
T  4156483 tactccctccatttttaaatataagcaaaattgactttttaggttcattcatttaatgat 4156424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 16865103 - 16865182
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||  ||| |||||||||||||  |||||  | ||||||| | ||||||||||||||| ||||||||||| |||||    
T  16865103 tatactcattccgtttttaaatataagcaaaatctattttttagatttatttatttaatgatgtatgtggtccatattat 16865182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 1858421 - 1858343
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||| ||||||||||||||||||  ||| || | |||||| || |||| | |||||||| ||||||||||| ||||||    
T  1858421 tactccctccatttttaaatataagcaaattttactttttaagtttattcaattaatgatgtatgtggtccatattata 1858343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 29938483 - 29938429
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgt 255  Q
    |||||||||||||  |||||||| ||||||||| |||| |||||||||| |||||    
T  29938483 tttttaaatataagcaaaattgattttttaggtttattcatttaatgatgtatgt 29938429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 267
Target Start/End: Original strand, 32364011 - 32364089
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||| |||| |||||||||||||| |||||||| ||||||  |  ||| |||||||||| |||||||| || |||||    
T  32364011 atactccctccgtttttaaatataaacaaaattgactttttaaattcattcatttaatgatgtatgtggttcatattat 32364089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 233
Target Start/End: Original strand, 2343335 - 2343380
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggt 233  Q
    ||||||| |||| ||||||||||||| ||||||||| |||||||||    
T  2343335 tatactcgctccgtttttaaatataagtaaaattgactttttaggt 2343380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 21478697 - 21478628
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtc 259  Q
    ||||| |||| |||||||||||||||||||||||  |||| |||  ||| | |||||||| |||||||||    
T  21478697 tactccctccgtttttaaatataaataaaattgatgtttttggttcattcaattaatgatgtatgtggtc 21478628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 28542337 - 28542394
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||||||| ||||||||| |||| ||||  ||| |||||||||| ||||||||    
T  28542337 tttttaaatataagtaaaattgacttttaaggttcattcatttaatgatgtatgtggt 28542394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 7246879 - 7246977
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaa 288  Q
    |||||| |||||||| |||||||||  |||||||| |||| ||||  ||| | |||||||| ||||||||||||     |||||| ||||| ||||||||    
T  7246879 atactcactccatttataaatataagcaaaattgactttt-aggttcattcaattaatgatgtatgtggtccac-----atatattattaattgaatgaa 7246972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 29318055 - 29318115
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||| |||||||| |||||||  |||||||||  ||| |||||||||| |||||||||||    
T  29318055 ttttttaatataaacaaaattgtttttttaggttcattcatttaatgatgtatgtggtcca 29318115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 29938357 - 29938417
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||||||||||||  |||||||| ||||||| |  ||| |||||||||| |||||||||||    
T  29938357 tttttaaatataagcaaaattgactttttagattcattcatttaatgatgtatgtggtcca 29938417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 261
Target Start/End: Original strand, 39294168 - 39294240
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||||| |||| |||||||||||||||||| |||| |||||||||  ||| | ||||||||||||||||||||    
T  39294168 atactccctccctttttaaatataaataaatttgactttttaggttcattcaattaatgatatatgtggtcca 39294240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 19911317 - 19911251
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    ||||| |||||||||||||||||| ||||||| | ||||||  | ||||||||||||||||||||||    
T  19911317 tactccctccatttttaaatataagtaaaattaattttttaaatttatttatttaatgatatatgtg 19911251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 293
Target Start/End: Original strand, 18592341 - 18592451
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatg 282  Q
    ||||| |||| |||||||||||||  |||||||| |||||||||  ||| |||||||||| |||||| |||| |||||       ||| |||||||||||    
T  18592341 tactccctccgtttttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtgatccatattatgaaccacatacatcattaaatg 18592440  T
Q  283 aatgaacctaa 293  Q
    |||||||||||    
T  18592441 aatgaacctaa 18592451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 51394091 - 51394171
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||  |||| ||||||||||||| ||||||||| ||||||  |  ||| |||||||||||||||||||||| |||||    
T  51394091 atatacttcctccgtttttaaatataagtaaaattgactttttatattcattcatttaatgatatatgtggtccatattat 51394171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 189 - 256
Target Start/End: Original strand, 35003105 - 35003172
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    |||||| |||| ||| ||||||||||||||||||| |||||||||  ||| |||||||||| ||||||    
T  35003105 atactccctccgtttctaaatataaataaaattgactttttaggttcattcatttaatgatgtatgtg 35003172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 55616813 - 55616888
Alignment:
Q  192 ctctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||||||||| | ||||||||| |||| ||||  ||| |||||||||| |||||||| || |||||    
T  55616813 ctctctccatttttaaatattagtaaaattgatttttcaggttcattcatttaatgatgtatgtggttcatattat 55616888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 267
Target Start/End: Original strand, 55624117 - 55624192
Alignment:
Q  192 ctctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||||||||| | ||||||||| |||| ||||  ||| |||||||||| |||||||| || |||||    
T  55624117 ctctctccatttttaaatattagtaaaattgatttttcaggttcattcatttaatgatgtatgtggttcatattat 55624192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 34100109 - 34100163
Alignment:
Q  204 ttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||||||||||||| ||||||  | ||||||||||||||||||| ||||    
T  34100109 ttaaatataaataaaattgagtttttaaatttatttatttaatgatatatatggt 34100163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 293
Target Start/End: Complemental strand, 34595829 - 34595724
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatg 286  Q
    |||||||| |||| |||||||||||||| |||||||| |||||||||  ||| | |||||||| ||| |||| ||    ||||| |||||||| ||||||    
T  34595829 atatactccctccgtttttaaatataaacaaaattgactttttaggttcattcaattaatgatgtatatggttca-tccatatacatcattaattgaatg 34595731  T
Q  287 aacctaa 293  Q
    |||||||    
T  34595730 aacctaa 34595724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 37252166 - 37252104
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||| ||||||||||||||||||| |||||| ||  ||| |||||||||| ||||||||    
T  37252166 ctccatttctaaatataaataaaattgactttttaagttcattcatttaatgatgtatgtggt 37252104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 5048570 - 5048501
Alignment:
Q  199 catttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||||||||||||| |||| || |||||||| || |||||| |||||||| | ||||||||| ||||||    
T  5048570 catttttaaatataagtaaattttaatttttaagtttatttaattaatgatgtgtgtggtccatattata 5048501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 255
Target Start/End: Complemental strand, 9803047 - 9802994
Alignment:
Q  202 ttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgt 255  Q
    |||||||||||||||||||||| |||||| || |||||| |||||||| |||||    
T  9803047 ttttaaatataaataaaattgattttttaagtttatttaattaatgatgtatgt 9802994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 24156135 - 24156212
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| |||||||||||||  |||||||| |||||||||  ||| |||||||||| |||||||| || |||||    
T  24156135 tactccctccgtttttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggttcatattat 24156212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 31914472 - 31914395
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| ||| ||||||||| ||||||||| ||||||| |  |||||||||||||| |||||||| || |||||    
T  31914472 tactccctccgtttctaaatataagtaaaattgactttttagattcatttatttaatgatgtatgtggtacatattat 31914395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 40545439 - 40545363
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| ||||||||||||| |||| |||| |||||||||  ||| | |||||||||||||||||||| |||||    
T  40545439 tactccctccgtttttaaatataagtaaa-ttgattttttaggttcattcacttaatgatatatgtggtccatattat 40545363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 35003254 - 35003144
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatg 282  Q
    ||||| |||||||||||| ||||| ||||||||| ||||||| |  ||||||||||| || ||||| || || |||||       ||| |||||||||||    
T  35003254 tactccctccatttttaagtataagtaaaattgattttttagattcatttatttaattatgtatgtcgttcatattataaatcacatacatcattaaatg 35003155  T
Q  283 aatgaacctaa 293  Q
    |||||||||||    
T  35003154 aatgaacctaa 35003144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 18327931 - 18327998
Alignment:
Q  191 actctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| |||| ||||| ||||||||||||||||| |||||||||  ||| |||||||||| ||| ||||    
T  18327931 actccctccgttttttaatataaataaaattgactttttaggttcattcatttaatgatgtatatggt 18327998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 18437468 - 18437401
Alignment:
Q  191 actctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| |||| ||||| ||||||||||||||||| |||||||||  ||| |||||||||| ||| ||||    
T  18437468 actccctccgttttttaatataaataaaattgactttttaggttcattcatttaatgatgtatatggt 18437401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 51545397 - 51545452
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||||||| |||||| | |||||||||  ||| ||||||||||||||||||||||    
T  51545397 aaatataaacaaaattcactttttaggttcattcatttaatgatatatgtggtcca 51545452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 8014177 - 8014247
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||| |||| | |||||||||||  |||||||| |||||||||  ||| |||||||||| ||||||||    
T  8014177 tatactccctccgtatttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggt 8014247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 26206731 - 26206661
Alignment:
Q  197 tccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||||||  ||| || | |||||||||  ||||| |||||||| ||||||||||| |||||    
T  26206731 tccatttttaaatataagcaaattttactttttaggttcatttaattaatgatgtatgtggtccatattat 26206661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Complemental strand, 38616543 - 38616477
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||||||| ||||||||| |||||  ||  ||| |||||||||| ||||||||||| |||||    
T  38616543 tttttaaatataagtaaaattgacttttttagttcattcatttaatgatgtatgtggtccatattat 38616477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 46495676 - 46495610
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgt 255  Q
    |||||| ||||||||||||||||||  |||||||| ||| |||||  ||| |||||||||| |||||    
T  46495676 atactccctccatttttaaatataagcaaaattgactttataggttcattcatttaatgatgtatgt 46495610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 48472756 - 48472818
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| ||||||||||||| ||||||||| |||||| ||  ||| |||||||||| ||||||||    
T  48472756 ctccgtttttaaatataagtaaaattgactttttaagttcattcatttaatgatgtatgtggt 48472818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 52164542 - 52164608
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||  ||||||||  ||||||||  ||| |||||||||| ||||||||||| |||||    
T  52164542 tttttaaatataagcaaaattgaccttttaggttcattcatttaatgatgtatgtggtccatattat 52164608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 1945509 - 1945436
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||||||||||| ||| || ||||||  |||||||| |||||||||  ||| | |||||||| |||||||||||    
T  1945509 tatactctctccgtttctatatataaccaaaattgactttttaggttcattcaattaatgatgtatgtggtcca 1945436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 20540712 - 20540781
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaattttt-aggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||| ||||| |||||| |||||||||| ||||| ||||  |||||||||| ||||||||||||    
T  20540712 tactccctccgttttttaatatagataaaattgatttttttaggttcatttatttaacgatatatgtggt 20540781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 23795587 - 23795640
Alignment:
Q  203 tttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    |||||||||||  |||||||| |||||||||  ||| |||||||||||||||||    
T  23795587 tttaaatataagcaaaattgattttttaggttcattcatttaatgatatatgtg 23795640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 33659909 - 33659848
Alignment:
Q  197 tccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||||||||||| |||| || | ||||||||| |||| | |||||||| ||||||||    
T  33659909 tccatttttaaatataagtaaattttattttttaggtttattcaattaatgatgtatgtggt 33659848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 38224082 - 38224013
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||||| |||||||||||||  |||||||| ||||||| |  ||| ||||||| || ||||||||    
T  38224082 atactctctccgtttttaaatataagcaaaattgactttttagattcattcatttaataatgtatgtggt 38224013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 33032896 - 33032960
Alignment:
Q  204 ttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||||||||| |||||||| |||||||||   || |||||||||| |||||||| || ||||||    
T  33032896 ttaaatataaacaaaattgactttttaggttcgttcatttaatgatgtatgtggttcatattata 33032960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 266
Target Start/End: Complemental strand, 34100231 - 34100167
Alignment:
Q  202 ttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacatta 266  Q
    ||||||||||||| |||||| |||||||| ||  ||| |||||||||| ||||| ||||| ||||    
T  34100231 ttttaaatataaacaaaattaaatttttaagttcattcatttaatgatgtatgtagtccatatta 34100167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 266
Target Start/End: Original strand, 34166108 - 34166184
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacatta 266  Q
    ||||| |||| ||| |||||||||  |||||||| |||||||||  ||| | |||||||| ||||||||||| ||||    
T  34166108 tactccctccgtttctaaatataagcaaaattgactttttaggttcattcaattaatgatgtatgtggtccatatta 34166184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 27146168 - 27146058
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatg 282  Q
    ||||| |||| |||||||||||||  |||||||| |||||||||  ||| |||||||||| ||||||||| |||||||       ||| |||||||||||    
T  27146168 tactccctccgtttttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggtctacattatgagacacatacatcattaaatg 27146069  T
Q  283 aatgaacctaa 293  Q
    |||||||||||    
T  27146068 aatgaacctaa 27146058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Original strand, 51245361 - 51245416
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    ||||||||||||| ||||||| | ||||||||| ||||||||||||||||||||||    
T  51245361 tttttaaatataagtaaaatttactttttaggtttatttatttaatgatatatgtg 51245416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 190 - 268
Target Start/End: Complemental strand, 15285386 - 15285308
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||| |||| |||||||||||||| |||||||| |||||||||  ||| |||||||||| |||||| |||| ||||||    
T  15285386 tactcactccgtttttaaatataaacaaaattgactttttaggttcattcatttaatgatgtatgtgatccatattata 15285308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 17387658 - 17387724
Alignment:
Q  202 ttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    |||||||||||| ||||||||| |||||||||  ||| |||||||||| ||||||||||| ||||||    
T  17387658 ttttaaatataagtaaaattgactttttaggttcattcatttaatgatgtatgtggtccatattata 17387724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 38847446 - 38847378
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||| |||||||||||||  |||||||| |||||||||  ||| |||||||||| ||||||||    
T  38847446 tactctctccgtttttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggt 38847378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 26856111 - 26856049
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| |||||| |||||| ||||||||| |||||||||  |||||||||||||| ||||||||    
T  26856111 ctccgtttttatatataagtaaaattgactttttaggttcatttatttaatgatgtatgtggt 26856049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 267
Target Start/End: Original strand, 1358168 - 1358245
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| || |||||||||| ||||||||| |||||| ||  ||||| |||||||| ||||||||||| |||||    
T  1358168 tactccctccgttattaaatataagtaaaattgactttttaagtacatttaattaatgatgtatgtggtccatattat 1358245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 435352 - 435272
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    ||||||| |||| |||| ||||||||  |||||| | |||||||||  ||| |||||||||| ||||||||||| ||||||    
T  435352 tatactcactccgttttaaaatataagcaaaattcactttttaggttcattcatttaatgatgtatgtggtccatattata 435272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 1344377 - 1344441
Alignment:
Q  203 tttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||||||| ||||||| | |||||||||  |||||||||||||| ||| ||||||| |||||    
T  1344377 tttaaatataagtaaaattaactttttaggttcatttatttaatgatgtatatggtccatattat 1344441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 24286893 - 24286799
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat-------atatatcattaaatgaatgaacctaa 293  Q
    ||||||||  |||||| | ||||||||| |||| ||||||||||||||||||| || | |||       ||||||||||||||||||||||||||    
T  24286893 aaatataagcaaaattcattttttaggtttattcatttaatgatatatgtggttcataatatggaccgcatatatcattaaatgaatgaacctaa 24286799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 42468976 - 42468889
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaacctaa 293  Q
    |||| ||||||||  |||||| | |||||||||  ||| |||||||||| ||||||||||||||     | ||||||||||||||||||||||    
T  42468976 ttttaaaatataagcaaaattcactttttaggttcattcatttaatgatgtatgtggtccacat-----acatcattaaatgaatgaacctaa 42468889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 293
Target Start/End: Complemental strand, 43147580 - 43147481
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcattaaatgaatgaa 288  Q
    |||||| |||| |||| ||||||||  |||||| | |||||| ||  ||| |||||||||| ||||||||||     ||||| |||||||||||||||||    
T  43147580 atactccctccgttttaaaatataagcaaaattcactttttatgttcattcatttaatgatgtatgtggtcc-----atatacatcattaaatgaatgaa 43147486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 189 - 256
Target Start/End: Complemental strand, 6792495 - 6792428
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtg 256  Q
    |||||| |||| | ||||||||||| ||||||| | |||||||||  ||| |||||||||||||||||    
T  6792495 atactccctccgtctttaaatataagtaaaatttactttttaggttcattcatttaatgatatatgtg 6792428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Complemental strand, 11994985 - 11994930
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    ||||||||| |||||| | |||||||||  |||||||||||||| |||||||||||    
T  11994985 aaatataaacaaaattcactttttaggttcatttatttaatgatgtatgtggtcca 11994930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 16427054 - 16426975
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||||| |||| |||||||||||||  |||||||| ||||||| |  ||| ||||||||||  |||||||||| |||||    
T  16427054 tatactccctccgtttttaaatataagcaaaattgattttttagattcattcatttaatgatgaatgtggtccatattat 16426975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 267
Target Start/End: Original strand, 40907173 - 40907252
Alignment:
Q  188 tatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||| ||| |||||||||  |||||||| |||||| ||  ||||| |||||||| |||||||| || |||||    
T  40907173 tatactctctccgtttctaaatataagaaaaattgactttttacgttcatttaattaatgatgtatgtggttcatattat 40907252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 259
Target Start/End: Complemental strand, 4683070 - 4683012
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtc 259  Q
    ||||||||||||||||||||||| ||||| |||  ||| | |||||||| |||||||||    
T  4683070 tttttaaatataaataaaattgacttttttggttcattcaattaatgatgtatgtggtc 4683012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 12062196 - 12062258
Alignment:
Q  196 ctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||| |||||||||||||  |||||||| |||||||||  ||| | |||||||||||||||||    
T  12062196 ctccgtttttaaatataaggaaaattgactttttaggttcattcaattaatgatatatgtggt 12062258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 267
Target Start/End: Original strand, 21852444 - 21852510
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||  |||||||| |||||||||  ||| | ||||||||||||||||| || |||||    
T  21852444 tttttaaatataagcaaaattgactttttaggttcattcaattaatgatatatgtggttcatattat 21852510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 293
Target Start/End: Original strand, 42468840 - 42468949
Alignment:
Q  179 atcatatgatatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattatatatatcatta 278  Q
    |||| ||||| |||||  ||| |||| ||||||||  |||||| | |||||||||  ||| |||||||||| ||||||| ||||||     | |||||||    
T  42468840 atcaaatgatgtactccttccgttttaaaatataagcaaaattcactttttaggttcattcatttaatgatgtatgtggaccacat-----acatcatta 42468934  T
Q  279 aatgaatgaacctaa 293  Q
    |||||||||||||||    
T  42468935 aatgaatgaacctaa 42468949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 22954919 - 22954838
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattata 268  Q
    |||||||| |||| | || ||||||||  |||||| | |||||||||  ||| |||||||||| ||||||||||| ||||||    
T  22954919 atatactccctccgtgttaaaatataagcaaaattcactttttaggttcattcatttaatgatgtatgtggtccatattata 22954838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 24015020 - 24015081
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||||||||||| | |||||||||  ||| |||||||||| |||||||| || |||||    
T  24015020 aaatataaataaaattcattttttaggttcattcatttaatgatgtatgtggttcatattat 24015081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 267
Target Start/End: Complemental strand, 37215316 - 37215239
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    ||||| |||| ||||| |||| ||  |||||||| |||||||||  |||||||||||||| |||||| |||| |||||    
T  37215316 tactccctccgttttttaatacaagcaaaattgactttttaggttcatttatttaatgatgtatgtgatccatattat 37215239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 1344513 - 1344453
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgat 249  Q
    |||||| |||| |||| ||||||||  |||||| | ||||||||| |||||||||||||||    
T  1344513 atactccctccgttttaaaatataagcaaaatttactttttaggtttatttatttaatgat 1344453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 6169956 - 6169916
Alignment:
Q  189 atactctctccatttttaaatataaataaaattgaattttt 229  Q
    |||||| |||| ||||||||||||||||||||||| |||||    
T  6169956 atactccctccgtttttaaatataaataaaattgatttttt 6169916  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 8552022 - 8552066
Alignment:
Q  186 gatatactctctccatttttaaatataaataaaattgaattttta 230  Q
    |||||||||  ||||||||||||||||| ||||||||| ||||||    
T  8552022 gatatactccatccatttttaaatataagtaaaattgatttttta 8552066  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 261
Target Start/End: Complemental strand, 15401931 - 15401871
Alignment:
Q  201 tttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtcca 261  Q
    |||||||||||||  |||||| | |||||||||  ||||||||||| || |||||||||||    
T  15401931 tttttaaatataagcaaaattaattttttaggttcatttatttaataatgtatgtggtcca 15401871  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 267
Target Start/End: Original strand, 24023358 - 24023438
Alignment:
Q  187 atatactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggtccacattat 267  Q
    |||||||| |||| ||| |||||||||  |||||| | ||||||||| |||| | ||||||||||| ||||| || |||||    
T  24023358 atatactccctccgtttctaaatataagcaaaatttattttttaggtttattcaattaatgatatacgtggttcatattat 24023438  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 30785691 - 30785639
Alignment:
Q  206 aaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||||||  |||||| | ||||||||| ||||||||||||||| ||||||||    
T  30785691 aaatataagcaaaattcactttttaggtttatttatttaatgatgtatgtggt 30785639  T

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Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 42788472 - 42788404
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| |||||| |||||||||||  |||||||| ||||||| |  ||| |||||||||| ||||||||    
T  42788472 tactccctccatatttaaatataagcaaaattgattttttagattcattcatttaatgatgtatgtggt 42788404  T

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Target: scaffold0121 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 17578 - 17510
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    |||||||||| |||||||||||||  |||||||| |||||||||  ||| |||||||||| ||||||||    
T  17578 tactctctccgtttttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatgtggt 17510  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 258
Target Start/End: Complemental strand, 22588 - 22520
Alignment:
Q  190 tactctctccatttttaaatataaataaaattgaatttttaggtctatttatttaatgatatatgtggt 258  Q
    ||||| ||| ||||||||||||||  |||||||| |||||||||  ||| |||||||||| ||| ||||    
T  22588 tactccctctatttttaaatataagcaaaattgactttttaggttcattcatttaatgatgtatatggt 22520  T

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