View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_high_4 (Length: 630)
Name: NF11175_high_4
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 23 - 614
Target Start/End: Complemental strand, 7078022 - 7077439
Alignment:
| Q |
23 |
aagatattgtaaatgcgattaaatcaacctctttgatgtaatttctcgttagnnnnnnnngggtcttgtatatatttttaatggcttccaaacccttttc |
122 |
Q |
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| T |
7078022 |
aagatattgtaaatgcaatcaaattaacctcttggatgtgaattctcgttagaaaaaagagtgtcttgtatattttttaaatggtttccaaaccctcttc |
7077923 |
T |
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| Q |
123 |
ttcatcataattcttgatttagggtgtttgtttttgtgggttgagtaccagaccgttgtttaaaacattgtagatgaatattattagtttgatttcatga |
222 |
Q |
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| T |
7077922 |
ttcatcataatttttgatttagggtgtttgtttttgtgggtt----accagaccgttgtttaaaacattgtagatgaatattactagtttgatttcatga |
7077827 |
T |
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| Q |
223 |
ggtcgcatccaacacatagtctttttgtgatctgaacttcatttatgagaccattgtccccaaattttattgtactcgattgtgaaacctcttgtactct |
322 |
Q |
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| T |
7077826 |
ggtcgcatccaacacatagtctttttgtgat---aacttcatttatgagaccattgtctccaaattttattgtacccgattgtgaaacctcttgtactct |
7077730 |
T |
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| Q |
323 |
atataaacaaaaatttgcttatagaaagatatacattaaacaatagnnnnnnnnccctactattcactaatttaaggatattcaaattattaaatgggtt |
422 |
Q |
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| T |
7077729 |
atataaacaaaaatttgcttatagaaagatat--attaaacaatag-tttttttccctactattcactcattaaagtatattcaaattattaaatgagtt |
7077633 |
T |
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| Q |
423 |
taaaccttttcaaccaataacgagggaaactagacgagactatggtttggtgatgt--aggagagccacgaagcttaattttaaagcaaaactgtaaggt |
520 |
Q |
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| T |
7077632 |
taaaccttttcaaccaataacgagggaaactagacgagactaaggtttggtgatgtagaggagagccacgaagcttaattttaaagcaaaactgcaaggt |
7077533 |
T |
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| Q |
521 |
tttggttgcttaacatctgaaggtttgggtttccgctatatttactaacaattaattttagttatgcctttacatcagtaggtaagggttgtat |
614 |
Q |
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| T |
7077532 |
tttggttgcttaacatctgaaggtttgggtttccgctatatttactaacaattaattttagttatgcctttacatcagtaggtaagggttgtat |
7077439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 7078217 - 7078050
Alignment:
| Q |
7 |
aggagcacagaggtggaagatattgtaaatgcgattaaatcaacctctttgatgtaatttctcgttagnnnnnnnngggtcttgtatatatttttaatgg |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| |||||||||||||||||||||||| |
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| T |
7078217 |
aggaacacagaggtggaagatattgtaaatgcgattaaatcaacctcttggatttaatttctcattagaaaaaaa-gggtcttgtatatatttttaatgg |
7078119 |
T |
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| Q |
107 |
cttccaaacccttttcttcatcataattcttgatttagggtgtttgtttttgtgggttgagtaccagac |
175 |
Q |
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| T |
7078118 |
cttccaaacccttttcttcatcataattcttgatttagggtgtttgttttggtgggtcgaataccagac |
7078050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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