View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_high_42 (Length: 216)
Name: NF11175_high_42
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_high_42 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 40078093 - 40078308
Alignment:
| Q |
1 |
cctatgaaccatgctcttccattgttgatcattcaaaccattctagtcatgtttgttagccgcaccctcgccttcttcctcaaaccccttcgtcaaccca |
100 |
Q |
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| T |
40078093 |
cctatgaaccatgctcttccattgttgatcattcaaaccattctagtcatgtttgttagccgcaccctcgccttcttcctcaaaccccttcgtcaaccca |
40078192 |
T |
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| Q |
101 |
gagttgttgctgagattattgtaagtaaataatatatggcaaggaaaaaacttaactaattacactatattattattgctactatatataataatttcca |
200 |
Q |
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| T |
40078193 |
gagttgttgctgagattattgtaagtaaataatatatggcaaggaaaaaacttaactaattacactatattattattgctactatatataataatttcca |
40078292 |
T |
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| Q |
201 |
ttaattgtatgcaata |
216 |
Q |
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|||||| ||||||||| |
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| T |
40078293 |
ttaattatatgcaata |
40078308 |
T |
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