View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_high_9 (Length: 502)
Name: NF11175_high_9
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_high_9 |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 210 - 282
Target Start/End: Original strand, 385231 - 385303
Alignment:
| Q |
210 |
tcaatagagagcaacatatcgaaaacagtagaagcagaaacgccagatttgcatgcttcaacaaattcagaag |
282 |
Q |
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| T |
385231 |
tcaatagagagcaacatatcaaaaacagtagaagcagaaacgccagatttgcatgcttcaacaaattcagaag |
385303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 384890 - 384963
Alignment:
| Q |
17 |
aaccaatgattaggatatataataactgtcacggttcaactgaaagccctttaatatgatgtaattgtaaaacaca |
92 |
Q |
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| T |
384890 |
aaccaatgattaggatat--aataactatcactgttcaagtgaaagccctttaatgtgatgtaattgtaaaacaca |
384963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 185
Target Start/End: Original strand, 384964 - 385035
Alignment:
| Q |
114 |
ctgtaaggtaaactgctaaggagatcattcaaaatggaagtactaggacgatgacccgtgttgatgatttta |
185 |
Q |
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| T |
384964 |
ctgtaacgtaaagtggttaagagatcattcagaatggaagtactgggatgatggccggtgttgatgatttta |
385035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 12722 - 12684
Alignment:
| Q |
295 |
cttgcatgcttcaacaattccaggatgaatataagagga |
333 |
Q |
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| T |
12722 |
cttgcatgcttcaacaattccaggatgaatataagagga |
12684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 295 - 333
Target Start/End: Original strand, 10421102 - 10421140
Alignment:
| Q |
295 |
cttgcatgcttcaacaattccaggatgaatataagagga |
333 |
Q |
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| T |
10421102 |
cttgcatgcttcaacaattccaggatgaatataagagga |
10421140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 295 - 333
Target Start/End: Complemental strand, 14925205 - 14925167
Alignment:
| Q |
295 |
cttgcatgcttcaacaattccaggatgaatataagagga |
333 |
Q |
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| T |
14925205 |
cttgcatgcttcaacaattccaggatgaatataagagga |
14925167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 190
Target Start/End: Original strand, 12533211 - 12533352
Alignment:
| Q |
49 |
ggttcaactgaaagccctttaatatgatgtaattgtaaaacacaactgctttacgaatctggcctctgtaaggtaaactgctaaggagatcattcaaaat |
148 |
Q |
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| T |
12533211 |
ggttcaactgaaaaccctttagtatggtgtaattataaaacataattgctttataaatctggcctctgagacataaacctcgaaaaagatcattcaatgt |
12533310 |
T |
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| Q |
149 |
ggaagtactaggacgatgacccgtgttgatgattttatggaa |
190 |
Q |
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| T |
12533311 |
ggaagtagtaggacgacgaccagtttcaatgattttacggaa |
12533352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 12540346 - 12540226
Alignment:
| Q |
49 |
ggttcaactgaaagccctttaatatgatgtaattgtaaaacacaactgctttacgaatctggcctctgtaaggtaaactgctaaggagatcattcaaaat |
148 |
Q |
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| T |
12540346 |
ggttcaactgaaaaccctttagtatggtgtaattataaaacataattgctttataaatctggcctctgagacataaacctcgaaaaatatcattcaatgt |
12540247 |
T |
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| Q |
149 |
ggaagtactaggacgatgacc |
169 |
Q |
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| T |
12540246 |
ggaagtagtaggacgatgacc |
12540226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 135 - 186
Target Start/End: Original strand, 671312 - 671362
Alignment:
| Q |
135 |
agatcattcaaaatggaagtactaggacgatgacccgtgttgatgattttat |
186 |
Q |
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| T |
671312 |
agatcattcaaagtggtagttctaggacgatga-ccgtgttgatgattttat |
671362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 677064 - 677008
Alignment:
| Q |
35 |
ataataactgtcacggttcaactgaaagccctttaatatgatgtaattgtaaaacac |
91 |
Q |
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| T |
677064 |
ataataactatcacggtccaaccgaaaacccttgagtatgatgtaatggtaaaacac |
677008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 175
Target Start/End: Original strand, 2289319 - 2289359
Alignment:
| Q |
135 |
agatcattcaaaatggaagtactaggacgatgacccgtgtt |
175 |
Q |
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| T |
2289319 |
agatcattcaaattggaagtactaggacgatggccagtgtt |
2289359 |
T |
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