View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_12 (Length: 439)
Name: NF11175_low_12
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_12 |
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| [»] scaffold0064 (1 HSPs) |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 218 - 427
Target Start/End: Original strand, 26815305 - 26815514
Alignment:
| Q |
218 |
tccatataactttgactgaaagacaaatagacatgcaaaaaggagaaccaacaataaactttgtatatactattccatttattgaagttgactatttttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26815305 |
tccatataactttgactgaaagacaaatagacatgcaaaaaggagaaccaacaataaactttgtatatactattccatttattgaagttgactatttttt |
26815404 |
T |
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| Q |
318 |
caaacaattacaaaagaataaaaactatttagaaaaataaataagctatgaaatcttataaaacaattttccaatcaaatgctggtgtagactgctgatc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26815405 |
caaacaattacaaaagaataaaaactatttagaaaaataaataagctatgaaatcttataaaacaattttccaatcaaatgctggtgtagactgctgatc |
26815504 |
T |
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| Q |
418 |
agttcatctc |
427 |
Q |
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||||| |||| |
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| T |
26815505 |
agttcttctc |
26815514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 26813450 - 26813560
Alignment:
| Q |
108 |
gacagctgagttatatagtcttaattccaactcttggagaaacattgatgctccaccttactaccctcttccatgtgatagttggagtacttctacaatt |
207 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26813450 |
gacagctaggttatatagtcttaattccaactcttggagaaacattgatgctccaccttactaccctcttccatgtgatagttggagtacttctacaatt |
26813549 |
T |
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| Q |
208 |
tacacttttgt |
218 |
Q |
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||||||||||| |
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| T |
26813550 |
tacacttttgt |
26813560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 133; Significance: 5e-69; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 55674 - 55822
Alignment:
| Q |
1 |
actgattttgctggatttgggtttgacccgaaaactaatgactataaagttgttgtgttaagagacatttggctaaagaaaacagatgaaagacaaaaag |
100 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
55674 |
actgattttgctggatttgggctcgacccgaaaactaatgactataaagttgttgtgctaagagacatttggctaaagaaaacagatgaaagacaaaaag |
55773 |
T |
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| Q |
101 |
ggcattggacagctgagttatatagtcttaattccaactcttggagaaa |
149 |
Q |
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| T |
55774 |
ggcattggacagctgagttatatagtcttaattctaactcttggagaaa |
55822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 21087708 - 21087866
Alignment:
| Q |
1 |
actgattttgctggatttgggtttgacccgaaaactaatgactataaagttgttgtgttaagagacatttggctaaagaaaacagatgaaagacaaaaag |
100 |
Q |
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||||||| |||| | ||||| ||||| || ||||||||||||||||||||| ||||| | | ||| ||||| ||||| ||||||||||||||||||||| |
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| T |
21087708 |
actgattatgctagttttggttttgatcctaaaactaatgactataaagttattgtgcttaaagatctttggttaaaggaaacagatgaaagacaaaaag |
21087807 |
T |
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| Q |
101 |
ggcattggacagctgagttatatagtcttaattccaactcttggagaaacattgatgct |
159 |
Q |
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|| ||||||||| ||||||||||||||||||||| |||||||||| ||| |||||||| |
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| T |
21087808 |
ggtattggacaggtgagttatatagtcttaattcaaactcttggaaaaagcttgatgct |
21087866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 16171 - 16329
Alignment:
| Q |
1 |
actgattttgctggatttgggtttgacccgaaaactaatgactataaagttgttgtgttaagagacatttggctaaagaaaacagatgaaagacaaaaag |
100 |
Q |
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||||||| |||| | ||||| ||||| || |||| ||||||||||||||||||| || | | ||| |||||| ||||| |||||||||| |||||||||| |
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| T |
16171 |
actgattatgctagttttggttttgatcccaaaagtaatgactataaagttgttatgctcaaagatatttggttaaaggaaacagatgatagacaaaaag |
16270 |
T |
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| Q |
101 |
ggcattggacagctgagttatatagtcttaattccaactcttggagaaacattgatgct |
159 |
Q |
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| T |
16271 |
gtttttggacagctgagttatacagtcataagtctaactcttggagaaaacttgatgct |
16329 |
T |
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