View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_low_13 (Length: 417)

Name: NF11175_low_13
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_low_13
NF11175_low_13
[»] chr5 (11 HSPs)
chr5 (167-321)||(38866650-38866801)
chr5 (167-277)||(29169650-29169763)
chr5 (167-240)||(38157693-38157769)
chr5 (371-415)||(29566579-29566623)
chr5 (181-265)||(1759143-1759231)
chr5 (371-417)||(1758941-1758987)
chr5 (371-417)||(38866934-38866980)
chr5 (371-417)||(29169433-29169479)
chr5 (371-417)||(29250514-29250560)
chr5 (371-417)||(29426402-29426448)
chr5 (371-416)||(32432183-32432228)
[»] chr4 (8 HSPs)
chr4 (175-264)||(27463345-27463434)
chr4 (175-265)||(18988058-18988149)
chr4 (371-417)||(18987841-18987887)
chr4 (371-417)||(27463119-27463165)
chr4 (371-417)||(27471718-27471764)
chr4 (371-417)||(27483491-27483537)
chr4 (371-417)||(27519859-27519905)
chr4 (212-265)||(27483715-27483768)
[»] chr3 (1 HSPs)
chr3 (371-417)||(25520120-25520166)
[»] chr7 (1 HSPs)
chr7 (371-409)||(1699993-1700031)


Alignment Details
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 167 - 321
Target Start/End: Original strand, 38866650 - 38866801
Alignment:
Q  167 gattattaaactgatagatggtataaaaatactttcattcatt---tca-ttcaaagaatgttgagatggtacataacaacttgtttagaaaacaaatgt 262  Q
    |||||||| ||||||||||||||||||||||||||||||||||   | | ||||||||||||||| || ||||||| |||||| |||| |||| ||||||    
T  38866650 gattattatactgatagatggtataaaaatactttcattcattgagtgagttcaaagaatgttgaaatagtacataccaacttatttacaaaa-aaatgt 38866748  T
Q  263 aagcgatgttcaaattcaaatataaattggttctagtgtcaaccaaatgctgctacaac 321  Q
    ||| ||||| ||||      |||||||||||||||||||||||||||||||||||||||    
T  38866749 aagggatgtacaaa------tataaattggttctagtgtcaaccaaatgctgctacaac 38866801  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 167 - 277
Target Start/End: Complemental strand, 29169763 - 29169650
Alignment:
Q  167 gattattaaactgata---gatggtataaaaatactttcattcatttcattcaaagaatgttgagatggtacataacaacttgtttagaaaacaaatgta 263  Q
    ||||||||||||||||   |||| ||||||||||||||||||||||   |||||||||||||||||| ||||||| ||| || |||| ||||||||||||    
T  29169763 gattattaaactgataatagatgttataaaaatactttcattcattaagttcaaagaatgttgagatagtacatatcaagttatttacaaaacaaatgta 29169664  T
Q  264 agcgatgttcaaat 277  Q
    || ||||| |||||    
T  29169663 agggatgtacaaat 29169650  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 38157769 - 38157693
Alignment:
Q  167 gattattaaactgat---agatggtataaaaatactttcattcatttcattcaaagaatgttgagatggtacataac 240  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  38157769 gattattaaactgatcatagatggtataaaaatactttcattcatttcattcaaagaatgttgagatagtccataac 38157693  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 415
Target Start/End: Original strand, 29566579 - 29566623
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacact 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  29566579 catatcccttgccacatggacacttgaaagtaaggcttaaacact 29566623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 265
Target Start/End: Complemental strand, 1759231 - 1759143
Alignment:
Q  181 tagatggtataaaaatacttt----cattcatttcattcaaagaatgttgagatggtacataacaacttgtttagaaaacaaatgtaag 265  Q
    |||||||||||||||||||||    ||||||||   |||||||||||||||||| ||||||| |||||| |||| ||||||||||||||    
T  1759231 tagatggtataaaaatactttgattcattcattaagttcaaagaatgttgagatagtacataccaacttatttacaaaacaaatgtaag 1759143  T

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Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 1758987 - 1758941
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  1758987 catatcccttgccacatggacatttgaaagtaaggcttaaacactta 1758941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 38866934 - 38866980
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  38866934 catatcccttgccacatggacacttgaaagtaaggcttaaactctta 38866980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 29169479 - 29169433
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  29169479 catatcccttgccacatgggcacctgaaagtaaggcttaaacactta 29169433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 29250560 - 29250514
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  29250560 catatcccttgccgcatggacacttgaaagtaaggctcaaacactta 29250514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 29426448 - 29426402
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||    
T  29426448 catatcccttgccacatggacacttgaaagtaaggtttaaactctta 29426402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 416
Target Start/End: Complemental strand, 32432228 - 32432183
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactt 416  Q
    |||| |||||||||||||||||| | ||| ||||||||||||||||    
T  32432228 cataccccttgccacatggacacctaaaaataaggcttaaacactt 32432183  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 27463434 - 27463345
Alignment:
Q  175 aactgatagatggtataaaaatactttcattcatttcattcaaagaatgttgagatggtacataacaacttgtttagaaaacaaatgtaa 264  Q
    ||||||||||||||||||||||| |||||||||||   |||||||||||||||||| ||||||| |||||| |||| |||||||||||||    
T  27463434 aactgatagatggtataaaaataatttcattcattatgttcaaagaatgttgagatagtacataccaacttatttacaaaacaaatgtaa 27463345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 18988149 - 18988058
Alignment:
Q  175 aactgatagatgg-tataaaaatactttcattcatttcattcaaagaatgttgagatggtacataacaacttgtttagaaaacaaatgtaag 265  Q
    ||||||||||||| ||||||||||||||||||||||   |||||||||||||||||| ||| ||| |||||| |||| ||||||||||||||    
T  18988149 aactgatagatgggtataaaaatactttcattcattaagttcaaagaatgttgagatagtatataccaacttatttacaaaacaaatgtaag 18988058  T

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Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 18987887 - 18987841
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  18987887 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 18987841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 27463165 - 27463119
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27463165 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 27463119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 27471764 - 27471718
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27471764 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 27471718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 27483537 - 27483491
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27483537 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 27483491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 417
Target Start/End: Original strand, 27519859 - 27519905
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27519859 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 27519905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 265
Target Start/End: Complemental strand, 27483768 - 27483715
Alignment:
Q  212 attcaaagaatgttgagatggtacataacaacttgtttagaaaacaaatgtaag 265  Q
    |||| |||||||||||||| ||||||| |||||| |||| ||||||||||||||    
T  27483768 attctaagaatgttgagatagtacataccaacttatttacaaaacaaatgtaag 27483715  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 371 - 417
Target Start/End: Complemental strand, 25520166 - 25520120
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggcttaaacactta 417  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  25520166 catatcccttgctacatggacacttgaaagtaaggcttaaacactta 25520120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 409
Target Start/End: Original strand, 1699993 - 1700031
Alignment:
Q  371 catatcccttgccacatggacacttgaaagtaaggctta 409  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  1699993 catagcccttgccacatggacacttgaaagtaaggctta 1700031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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