View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11175_low_15 (Length: 403)

Name: NF11175_low_15
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11175_low_15
NF11175_low_15
[»] chr6 (21 HSPs)
chr6 (18-273)||(20973228-20973483)
chr6 (18-100)||(32598013-32598095)
chr6 (355-394)||(20973107-20973146)
chr6 (119-242)||(27443768-27443891)
chr6 (103-244)||(13345714-13345849)
chr6 (99-188)||(32451724-32451813)
chr6 (100-185)||(35102490-35102575)
chr6 (100-188)||(22968371-22968458)
chr6 (100-188)||(23819935-23820022)
chr6 (100-188)||(24051008-24051095)
chr6 (101-239)||(30495660-30495797)
chr6 (100-188)||(31210793-31210881)
chr6 (101-188)||(18749345-18749432)
chr6 (18-98)||(20971165-20971251)
chr6 (101-188)||(26710524-26710611)
chr6 (100-231)||(27437827-27437958)
chr6 (101-213)||(15907860-15907972)
chr6 (99-159)||(3333069-3333129)
chr6 (100-188)||(4597622-4597710)
chr6 (100-188)||(8412757-8412845)
chr6 (60-100)||(20981615-20981655)
[»] chr1 (11 HSPs)
chr1 (100-232)||(35066972-35067104)
chr1 (101-188)||(46432433-46432520)
chr1 (100-197)||(51685770-51685867)
chr1 (100-188)||(4059739-4059827)
chr1 (99-188)||(3616797-3616886)
chr1 (100-188)||(24961952-24962040)
chr1 (100-188)||(28920868-28920956)
chr1 (18-98)||(41403762-41403848)
chr1 (115-168)||(2657527-2657580)
chr1 (136-188)||(21148012-21148065)
chr1 (124-177)||(21946622-21946675)
[»] chr8 (14 HSPs)
chr8 (101-252)||(36249552-36249702)
chr8 (115-173)||(30927658-30927715)
chr8 (100-206)||(42982653-42982759)
chr8 (115-188)||(12723478-12723551)
chr8 (101-241)||(32973897-32974037)
chr8 (101-239)||(10006344-10006482)
chr8 (115-177)||(36337599-36337660)
chr8 (99-188)||(4519084-4519173)
chr8 (115-188)||(8802616-8802689)
chr8 (99-188)||(17648241-17648330)
chr8 (100-241)||(32968455-32968596)
chr8 (99-239)||(38980007-38980147)
chr8 (99-239)||(39011104-39011244)
chr8 (99-183)||(44146970-44147054)
[»] chr5 (14 HSPs)
chr5 (138-232)||(24468557-24468650)
chr5 (103-188)||(2373149-2373232)
chr5 (125-239)||(5034636-5034750)
chr5 (101-183)||(41663744-41663826)
chr5 (125-242)||(5033746-5033861)
chr5 (99-188)||(16307694-16307783)
chr5 (100-197)||(25523068-25523165)
chr5 (125-178)||(38476494-38476547)
chr5 (104-232)||(20216733-20216861)
chr5 (99-174)||(31576591-31576665)
chr5 (138-196)||(3598885-3598943)
chr5 (98-184)||(8645794-8645880)
chr5 (100-157)||(33160331-33160388)
chr5 (138-206)||(3597360-3597428)
[»] scaffold0572 (2 HSPs)
scaffold0572 (349-394)||(8902-8947)
scaffold0572 (18-98)||(7019-7105)
[»] chr4 (12 HSPs)
chr4 (99-188)||(6789175-6789264)
chr4 (101-159)||(10447006-10447065)
chr4 (99-241)||(3927664-3927806)
chr4 (99-241)||(3928819-3928961)
chr4 (138-239)||(50841322-50841423)
chr4 (101-185)||(13394536-13394620)
chr4 (125-188)||(25011759-25011822)
chr4 (101-187)||(4357252-4357338)
chr4 (125-159)||(10448303-10448337)
chr4 (99-188)||(13397892-13397981)
chr4 (170-239)||(17388174-17388243)
chr4 (115-168)||(45633673-45633726)
[»] chr2 (11 HSPs)
chr2 (115-188)||(2986700-2986773)
chr2 (99-188)||(11175905-11175994)
chr2 (170-242)||(8535616-8535688)
chr2 (100-188)||(18538045-18538133)
chr2 (115-188)||(25299018-25299090)
chr2 (115-161)||(5819754-5819800)
chr2 (100-185)||(2986906-2986991)
chr2 (115-188)||(6763934-6764007)
chr2 (100-157)||(38840538-38840595)
chr2 (100-188)||(15700746-15700834)
chr2 (100-188)||(15735063-15735151)
[»] scaffold0003 (2 HSPs)
scaffold0003 (119-242)||(43470-43593)
scaffold0003 (100-231)||(49404-49535)
[»] scaffold0586 (1 HSPs)
scaffold0586 (104-196)||(6346-6438)
[»] chr7 (7 HSPs)
chr7 (99-186)||(9822287-9822372)
chr7 (99-186)||(10724212-10724297)
chr7 (185-273)||(23621868-23621956)
chr7 (95-185)||(42271552-42271642)
chr7 (120-188)||(20636638-20636706)
chr7 (120-188)||(20638510-20638578)
chr7 (101-157)||(47525412-47525468)
[»] chr3 (12 HSPs)
chr3 (104-213)||(39844184-39844295)
chr3 (104-194)||(39843054-39843144)
chr3 (98-188)||(48907509-48907598)
chr3 (115-188)||(26628242-26628315)
chr3 (100-188)||(27852968-27853056)
chr3 (101-187)||(13080894-13080980)
chr3 (101-186)||(3329032-3329117)
chr3 (138-207)||(26722570-26722638)
chr3 (98-183)||(33279583-33279667)
chr3 (99-159)||(54987050-54987108)
chr3 (100-188)||(25179577-25179665)
chr3 (115-186)||(51347281-51347353)
[»] scaffold0025 (1 HSPs)
scaffold0025 (99-188)||(61812-61901)
[»] scaffold0127 (1 HSPs)
scaffold0127 (18-98)||(30487-30573)
[»] scaffold1875 (1 HSPs)
scaffold1875 (100-185)||(755-840)
[»] scaffold0690 (1 HSPs)
scaffold0690 (124-168)||(4305-4348)
[»] scaffold0607 (1 HSPs)
scaffold0607 (100-188)||(2266-2352)
[»] scaffold0062 (2 HSPs)
scaffold0062 (100-188)||(49658-49746)
scaffold0062 (100-188)||(62197-62285)
[»] scaffold0049 (1 HSPs)
scaffold0049 (120-241)||(7880-8003)
[»] scaffold0019 (1 HSPs)
scaffold0019 (102-242)||(61419-61559)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 20973483 - 20973228
Alignment:
Q  18 gaatatacattcatatgcttacttcttatgtcaatgcacctattcagttctttattttgaaagcatcatctataaataaagaaggctaaagtacacattt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||    
T  20973483 gaatatacattcatatgcttacttcttatgtcaatgcacctattcagttctttattatgaaagcatcatctataaataaagaaggctaaagtgcactttt 20973384  T
Q  118 ccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttc 217  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20973383 ccccctttaagtttcaataagttgcgattttaacaccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttc 20973284  T
Q  218 tggacaattttgacttagtcaatgcatgtctggcacctagtaggatgccacatgtg 273  Q
    ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20973283 tggccaattttgacttagtcaatgcatgtgtggcacctagtaggatgccacatgtg 20973228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 32598013 - 32598095
Alignment:
Q  18 gaatatacattcatatgcttacttcttatgtcaatgcacctattcagttctttattttgaaagcatcatctataaataaagaa 100  Q
    ||||||||||||| |||||||| |||| |||||  |||||| ||  ||||||||||||||||| |||||||||||||||||||    
T  32598013 gaatatacattcacatgcttacatcttgtgtcatggcacctgttacgttctttattttgaaagtatcatctataaataaagaa 32598095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 20973146 - 20973107
Alignment:
Q  355 aaattcatattgttcttcaacttcatcacaccttcatctc 394  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20973146 aaattcatattgttcttcaacttcatcacaccttcatctc 20973107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 242
Target Start/End: Original strand, 27443768 - 27443891
Alignment:
Q  119 cccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttct 218  Q
    |||| ||||||||||| ||||||| |||||  || | |||  ||||||||||||||||| | ||| ||||  ||| ||| ||||||||| |||||||| |    
T  27443768 cccccttaagtttcaaaaagttgcaattttgacctcttatttaataaaatgacaaatttaatcccttatgttttaacccctttacaatagtagtcctttt 27443867  T
Q  219 ggacaattttgacttagtcaatgc 242  Q
    |  |||||||||||| ||||||||    
T  27443868 gttcaattttgactttgtcaatgc 27443891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 244
Target Start/End: Complemental strand, 13345849 - 13345714
Alignment:
Q  103 ctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccattta 202  Q
    ||||||||||| ||||| ||  |||||||||  |||||| |||||| |||||||||  || |||||||  ||||| ||| |||| |||||||||| ||      
T  13345849 ctaaagtacacttttccacccctaagtttcacaaagttgtgattttggccccctat--aaaaaaatgaataattttacctcctaagaattagcccctt-- 13345754  T
Q  203 caatattagtccttctggacaattttgacttagtcaatgcat 244  Q
      ||| ||| |||| ||| ||||||| |||||||||||||||    
T  13345753 --atagtagaccttttggccaattttaacttagtcaatgcat 13345714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 32451724 - 32451813
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| | ||| |||| |||| |||||||||| | |||| |||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  32451724 aaggctaaacttcacttttcgccctctaagtttcaaaatgttgtgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 32451813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 35102490 - 35102575
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccct 185  Q
    |||||||||| ||| |||| |||  || ||||||| | ||||||||||||||||||||| ||| |||||| ||| |||| ||||||    
T  35102490 aggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttagccccctattaaaaaaaatggcaattttggccccct 35102575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 22968458 - 22968371
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| ||| |||| ||| ||||||||||| | ||||||||||| | ||||||| ||| |||||| ||||  ||||||||||||    
T  22968458 aggctaaagttcacttttcgccccttaagtttcaaaatgttgcgatttt-ggcccctattaaaaaaaatggcaaaagtgaccccctatg 22968371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 23819935 - 23820022
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| ||| |||| ||| ||||||||||| | ||||||||||| | ||||||| ||| |||||| ||||  ||||||||||||    
T  23819935 aggctaaagttcacttttcgccccttaagtttcaaaatgttgcgatttt-ggcccctattaaaaaaaatggcaaaagtgaccccctatg 23820022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 24051008 - 24051095
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  24051008 aggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaa-aaaatggcaaaagtgaccccctatg 24051095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 30495797 - 30495660
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgacccc-ctatgaattagcccat 199  Q
    ||||||||| ||| ||| |||||  || |||||| ||||||||||||||  |||||||| |  ||||| |||| |||| |||| ||| || |||||||||    
T  30495797 ggctaaagtgcactttttcccct--aactttcaaaaagttgcgattttaatcccctatgtacaaaaataacaattttggcccctctaagatttagcccat 30495700  T
Q  200 ttacaatattagtccttctggacaattttgacttagtcaa 239  Q
    || ||||| |||||||  ||| |||||||||  |||||||    
T  30495699 ttgcaataatagtcctcttggccaattttgatctagtcaa 30495660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 31210793 - 31210881
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| ||||||| || | ||||||||||| ||| ||||| ||| |||||||||||  ||||||||||||    
T  31210793 aggctaaacttcacttttcgccctctaagttttaaaatgttgcgattttggcctcctattaaaaaaaatgacaaaagtgaccccctatg 31210881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 18749432 - 18749345
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||| | ||| |||| |||| |||||||||| | |||||||||||  |||||||| ||| |||||| ||||  ||||||||||||    
T  18749432 ggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttgaccccctattaaaaaaaatggcaaaagtgaccccctatg 18749345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 20971251 - 20971165
Alignment:
Q  18 gaatatacattcatatgcttacttcttatgtcaatgcac------ctattcagttctttattttgaaagcatcatctataaataaag 98  Q
    |||||| ||||||||| ||||| |||||||||| |||||      || |||||||||||||||||| || |||||||||||| ||||    
T  20971251 gaatattcattcatattcttacatcttatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaag 20971165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 26710611 - 26710524
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||| | ||| |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||   |||||||||||    
T  26710611 ggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagcgaccccctatg 26710524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 27437827 - 27437958
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccat 199  Q
    |||||||||| ||| |||| ||| |||| ||| || ||||||| ||||| ||||||||| ||  ||||  |||| |||||||||||| || ||||| | |    
T  27437827 aggctaaagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaaactacaattttgaccccctaagatttagctcct 27437926  T
Q  200 ttacaatattagtccttctggacaattttgac 231  Q
    || |||  || |||||| ||| ||||||||||    
T  27437927 ttgcaactttggtccttttggccaattttgac 27437958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 15907972 - 15907860
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaa-atgacaaatttgaccccctatgaattagcccat 199  Q
    ||||||||| ||| ||| | || ||||||||||| |||||||||||||  ||| |||| ||||||| |||| ||||||  |||| ||||  ||||||| |    
T  15907972 ggctaaagtgcaccttttctccgttaagtttcaaaaagttgcgattttgtccctctat-aaataaatatgataaatttagccccttatgttttagcccct 15907874  T
Q  200 ttacaatattagtc 213  Q
    || |||||||||||    
T  15907873 ttgcaatattagtc 15907860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 3333129 - 3333069
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatg 159  Q
    ||||||||| | ||| ||||||| | ||||||| || ||||||||||||| ||||||||||    
T  3333129 aaggctaaattgcacttttccccttctaagtttgaaaaagttgcgattttggccccctatg 3333069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 4597710 - 4597622
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| |||||||||| | ||||| ||||| ||||||||| | | |||||| ||||  ||||||||||||    
T  4597710 aggctaaacttcacttttcgccctctaagtttcaaaatgttgcaattttggccccctattataaaaaatggcaaaaatgaccccctatg 4597622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 8412757 - 8412845
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| ||| || | ||| ||||||||||| | ||||||||||| || |||||| ||| |||||| ||||   |||||||||||    
T  8412757 aggctaaagtccactttccgccccttaagtttcaaaatgttgcgattttggctccctattaaaaaaaatggcaaaagcgaccccctatg 8412845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 20981655 - 20981615
Alignment:
Q  60 ttcagttctttattttgaaagcatcatctataaataaagaa 100  Q
    |||| |||||||||||||||  |||||||||||||||||||    
T  20981655 ttcacttctttattttgaaaatatcatctataaataaagaa 20981615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 232
Target Start/End: Complemental strand, 35067104 - 35066972
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccat 199  Q
    |||||||||| ||| |||||||| ||||||||||| ||||||||||||| ||||||||||||  ||||  |||| |||| |||||||  | ||||||| |    
T  35067104 aggctaaagtgcacttttccccccttaagtttcaaaaagttgcgattttggccccctatgaacaaaaactacaattttggccccctaatatttagcccct 35067005  T
Q  200 ttacaatattagtccttctggacaattttgact 232  Q
    || ||||| |||||||| ||| |||||||||||    
T  35067004 ttgcaataatagtccttttggtcaattttgact 35066972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 101 - 188
Target Start/End: Complemental strand, 46432520 - 46432433
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| ||| |||| ||| ||||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  46432520 ggctaaagtccacttttcgccccttaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 46432433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 51685867 - 51685770
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagccc 197  Q
    |||||||||| ||| ||||||||| ||| |||||| ||||||||||||| |||| ||||| |  ||||  |||| |||||||||||| || |||||||    
T  51685867 aggctaaagtgcacttttccccctctaactttcaaaaagttgcgattttggccctctatgtacaaaaactacaattttgaccccctaagatttagccc 51685770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 4059827 - 4059739
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| |||||||||| | ||||||||||||||||||||| ||| |||||| ||||  |||||| |||||    
T  4059827 aggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttagccccctattaaaaaaaatggcaaaagtgaccctctatg 4059739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 3616797 - 3616886
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| | ||| |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||| ||||||    
T  3616797 aaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgacctcctatg 3616886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 24961952 - 24962040
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| |||||||||| | |||| |||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  24961952 aggctaaacttcacttttcgccctctaagtttcaaaatgttgtgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 24962040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 28920956 - 28920868
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||  |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  28920956 aggctaaacttcacttttcgccccctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 28920868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 41403848 - 41403762
Alignment:
Q  18 gaatatacattcatatgcttacttcttatgtcaatgcac------ctattcagttctttattttgaaagcatcatctataaataaag 98  Q
    |||||| ||||||||||||||| ||| |||||| |||||      || |||||||||||||||||| || |||||||||||| ||||    
T  41403848 gaatattcattcatatgcttacatctcatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaag 41403762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 2657527 - 2657580
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaat 168  Q
    |||| |||||||||||| || | ||||||||||||||||||||| ||| |||||    
T  2657527 tttcgccctttaagttttaaaatgttgcgattttagccccctattaaaaaaaat 2657580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 21148012 - 21148065
Alignment:
Q  136 aagttgcgattttagccccct-atgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||||||| ||||||| |||||| |||||||||||  ||||||||||||    
T  21148012 aagttgcgattttggcccccttatgaaaaaaaatgacaaaagtgaccccctatg 21148065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 177
Target Start/End: Complemental strand, 21946675 - 21946622
Alignment:
Q  124 ttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaattt 177  Q
    |||||||| || ||||||||||||| | ||||||| ||| ||||||||||||||    
T  21946675 ttaagtttaaaaaagttgcgattttggtcccctattaaacaaaatgacaaattt 21946622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 36249552 - 36249702
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatt 200  Q
    ||||||||| ||| |||||||| ||||||||||| ||||||| ||||| ||| ||||||||  |||||||||||||| | ||| ||||  |||| || ||    
T  36249552 ggctaaagtgcacttttccccccttaagtttcaaaaagttgcaattttggcctcctatgaataaaaatgacaaatttaatcccttatgttttaggccctt 36249651  T
Q  201 tacaatattagtccttctggacaattttgacttagtcaatgcatgtctggca 252  Q
    | |||||||| ||||| ||  ||||||||||  ||||||||||||| |||||    
T  36249652 tgcaatattaatccttttgtccaattttgac-cagtcaatgcatgtgtggca 36249702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 30927715 - 30927658
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaa 173  Q
    ||||||||||||||||| || ||||||||||||||| ||||||| ||| ||||||||||    
T  30927715 tttccccctttaagtttaaaaaagttgcgattttag-cccctattaaacaaaatgacaa 30927658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 206
Target Start/End: Complemental strand, 42982759 - 42982653
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccat 199  Q
    |||||||||| ||| ||||| ||||||||||| || ||||||  ||||| ||||||| | ||  ||||  |||| |||||||||  | ||||||||||||    
T  42982759 aggctaaagtgcacttttccacctttaagttttaaaaagttgtaattttggccccctgtaaacaaaaactacaattttgacccctcaagaattagcccat 42982660  T
Q  200 ttacaat 206  Q
    |||||||    
T  42982659 ttacaat 42982653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 12723551 - 12723478
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  12723551 tttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaaatgaccccctatg 12723478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 241
Target Start/End: Complemental strand, 32974037 - 32973897
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatt 200  Q
    ||||||||| ||| ||| ||||  ||| |||||| | ||||||||||| |||||| ||| |  ||||  |||| |||| ||| |||||  ||||||| ||    
T  32974037 ggctaaagtgcactttttcccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccctctatgttttagcccctt 32973938  T
Q  201 tacaatattagtccttctggacaattttgacttagtcaatg 241  Q
    | || | | ||||||| |||||||||||||||| |||||||    
T  32973937 tgcattttcagtccttttggacaattttgacttggtcaatg 32973897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 10006344 - 10006482
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatt 200  Q
    ||||||||| ||| ||||||||| ||| |||||| || |||| ||||| |||||||| | |  ||||  |||| |||| ||||||| || ||||||| ||    
T  10006344 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaacaacaattttggccccctaagatttagcccctt 10006443  T
Q  201 tacaatattagtccttctggacaattttgacttagtcaa 239  Q
    | ||   || |||||| ||| ||||||||||||| ||||    
T  10006444 tgcatctttggtccttttggtcaattttgacttattcaa 10006482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 36337660 - 36337599
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaattt 177  Q
    |||||| ||||||||||||| ||||||| ||||| | ||||||| ||| ||||||||||||||    
T  36337660 tttccctctttaagtttcaaaaagttgcaatttt-gacccctattaaacaaaatgacaaattt 36337599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 4519173 - 4519084
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| | ||| ||||  ||| |||||||||| | ||||||||||| || |||||| ||| |||||| ||||  ||||||||||||    
T  4519173 aaggctaaacttcacttttcgtcctctaagtttcaaaatgttgcgattttggctccctattaaaaaaaatggcaaaagtgaccccctatg 4519084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 8802689 - 8802616
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  |||||| |||||    
T  8802689 tttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccctctatg 8802616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 17648241 - 17648330
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| | ||| |||| |||| |||||||||| | |||| |||||| || |||||| ||| |||||| ||||  ||||||||||||    
T  17648241 aaggctaaacttcacttttcgccctctaagtttcaaaatgttgtgattttggctccctattaaaaaaaatggcaaaagtgaccccctatg 17648330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 241
Target Start/End: Original strand, 32968455 - 32968596
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccat 199  Q
    |||||||||| ||| ||||||||  ||| |||||| | ||||||||||| |||||| ||| |  ||||  |||| |||| ||| |||||  ||||||| |    
T  32968455 aggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccctctatgttttagcccct 32968554  T
Q  200 ttacaatattagtccttctggacaattttgacttagtcaatg 241  Q
    || || | | ||||||| ||  |||||||||||| |||||||    
T  32968555 ttgcattttcagtccttttgagcaattttgacttggtcaatg 32968596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 38980147 - 38980007
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagccca 198  Q
    ||||||||||| ||| ||||||||  ||| |||||| | ||||||||||| |||||| ||| |  ||||  |||| |||| |||||||||  |||||||     
T  38980147 aaggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatgttttagcccc 38980048  T
Q  199 tttacaatattagtccttctggacaattttgacttagtcaa 239  Q
     || || | | ||||||| ||| ||||||||| || |||||    
T  38980047 attgcagtttcagtccttttgggcaattttgaattggtcaa 38980007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 239
Target Start/End: Complemental strand, 39011244 - 39011104
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagccca 198  Q
    ||||||||||| ||| ||||||||  ||| |||||| | ||||||||||| |||||| ||| |  ||||  |||| |||| |||||||||  |||||||     
T  39011244 aaggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaaccacaattttggccccctatgttttagcccc 39011145  T
Q  199 tttacaatattagtccttctggacaattttgacttagtcaa 239  Q
     || || | | ||||||| ||| ||||||||| || |||||    
T  39011144 attgcagtttcagtccttttgggcaattttgaattggtcaa 39011104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 44146970 - 44147054
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgacccc 183  Q
    ||||||||| | ||| |||| ||||  ||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  |||||||    
T  44146970 aaggctaaacttcacttttcgccctccaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgacccc 44147054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 138 - 232
Target Start/End: Complemental strand, 24468650 - 24468557
Alignment:
Q  138 gttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttctggacaattttgact 232  Q
    ||||| |||||| |||||||| ||| ||||||||||| ||   |||||||||||||||||||||||||||||||||||| |   |||||||||||    
T  24468650 gttgcaattttaaccccctattaaa-aaaatgacaaacttagtcccctatgaattagcccatttacaatattagtccttttaatcaattttgact 24468557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 188
Target Start/End: Original strand, 2373149 - 2373232
Alignment:
Q  103 ctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||| ||| |||| ||| |||||||| || ||||||||||||||||||| ||||||  |||| ||||||  ||||||||||||    
T  2373149 ctaaagtgcacttttcaccccttaagttttaaaaagttgcgattttagccccatatgaa--aaaaagacaaacgtgaccccctatg 2373232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 239
Target Start/End: Complemental strand, 5034750 - 5034636
Alignment:
Q  125 taagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttctggacaa 224  Q
    ||||||| || | ||||||||||| ||||| | | ||| ||||||||||||||   ||||||| ||||||||| ||  ||||| ||||| |||||  |||    
T  5034750 taagtttaaaaatgttgcgattttggccccttcttaaaaaaaatgacaaatttagtcccctataaattagccccttcgcaatagtagtcgttctgttcaa 5034651  T
Q  225 ttttgacttagtcaa 239  Q
    |||||||| ||||||    
T  5034650 ttttgactcagtcaa 5034636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Complemental strand, 41663826 - 41663744
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgacccc 183  Q
    ||||||||| ||  |||| |||||||||||| || ||||||||||||| |||||||| |||| ||||| |||||  |||||||    
T  41663826 ggctaaagtgcatttttcaccctttaagttttaaaaagttgcgattttggccccctaagaaaaaaaattacaaaagtgacccc 41663744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 242
Target Start/End: Original strand, 5033746 - 5033861
Alignment:
Q  125 taagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttctggacaa 224  Q
    ||||||| || | ||||||||||| ||||| ||| ||| ||||||||||||||   ||||||| ||||||||| ||| ||||| |||||||| ||| | |    
T  5033746 taagtttaaaaatgttgcgattttggccccttattaaa-aaaatgacaaatttagtcccctataaattagcccgtttgcaatagtagtcctt-tggccta 5033843  T
Q  225 ttttgacttagtcaatgc 242  Q
    |||||||  |||||||||    
T  5033844 ttttgacccagtcaatgc 5033861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 16307783 - 16307694
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| || ||| |||| |||||||||||| || | |||||||||||||| |||||| ||| |||||  ||||  ||||||||||||    
T  16307783 aaggctaaggtccacttttcgccctttaagttttaaaatgttgcgattttagctccctattaaaaaaaattgcaaaagtgaccccctatg 16307694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 197
Target Start/End: Original strand, 25523068 - 25523165
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagccc 197  Q
    |||||||||| ||| |||||||| |||| |||||| || |||| |||||||||||||| | |  ||||  |||| |||||||||||| || |||||||    
T  25523068 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaaactacaattttgaccccctaagatttagccc 25523165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 38476494 - 38476547
Alignment:
Q  125 taagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttg 178  Q
    |||||| ||| |||||||||||||||||||||||  ||||||||||||| ||||    
T  38476494 taagttacaaaaagttgcgattttagccccctatttaataaaatgacaattttg 38476547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 20216861 - 20216733
Alignment:
Q  104 taaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttac 203  Q
    |||||| ||| |||||||| |||| |||||| || |||| |||||||| ||||||  |  ||||  |||| |||| ||||| | |||||||||||||| |    
T  20216861 taaagtgcacttttccccccttaattttcaaaaacttgcaattttagctccctatatacaaaaactacaattttggccccccaagaattagcccatttgc 20216762  T
Q  204 aatattagtccttctggacaattttgact 232  Q
    |||| ||||||||   | |||||||||||    
T  20216761 aatagtagtcctttacgtcaattttgact 20216733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 99 - 174
Target Start/End: Complemental strand, 31576665 - 31576591
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaa 174  Q
    ||||||||||| ||| |||| ||| |||||||| || |||||||||||||  |||||||| ||| |||||||||||    
T  31576665 aaggctaaagtgcacttttcaccccttaagttttaaaaagttgcgattttgtccccctat-aaaaaaaatgacaaa 31576591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 3598943 - 3598885
Alignment:
Q  138 gttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcc 196  Q
    ||||||||||| ||||||||| ||| |||||||||| ||||  ||||||||| ||||||    
T  3598943 gttgcgattttggccccctattaaaaaaaatgacaattttggtcccctatgatttagcc 3598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 184
Target Start/End: Original strand, 8645794 - 8645880
Alignment:
Q  98 gaaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccc 184  Q
    |||||||||| | ||| |||| |||| | |||||||| | |||||||||||  |||||||| ||| |||||| |||| |||||||||    
T  8645794 gaaggctaaacttcacttttcgccctcttagtttcaaaatgttgcgattttgaccccctattaaaaaaaatggcaaaattgaccccc 8645880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 33160388 - 33160331
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagcccccta 157  Q
    |||||||||| ||| |||||||| |||| |||||| || |||| ||||||||||||||    
T  33160388 aggctaaagtgcacttttccccccttaattttcaaaaacttgcaattttagcccccta 33160331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 3597360 - 3597428
Alignment:
Q  138 gttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaat 206  Q
    ||||||||||| ||||| ||| ||| ||||||| || ||||| ||||||||| ||||||| ||| ||||    
T  3597360 gttgcgattttggccccttattaaaaaaaatgataattttgatcccctatgatttagcccctttgcaat 3597428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0572
Description:

Target: scaffold0572; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 349 - 394
Target Start/End: Complemental strand, 8947 - 8902
Alignment:
Q  349 ctaagaaaattcatattgttcttcaacttcatcacaccttcatctc 394  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  8947 ctaaggaaattcatattgttcttcaacttcatcacaccttcatctc 8902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0572; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 7105 - 7019
Alignment:
Q  18 gaatatacattcatatgcttacttcttatgtcaatgcac------ctattcagttctttattttgaaagcatcatctataaataaag 98  Q
    |||||| ||||||||||||||| ||| |||||| |||||      || |||||||||||||||||| || |||||||||||| ||||    
T  7105 gaatattcattcatatgcttacatctcatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaag 7019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 6789264 - 6789175
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| | ||| |||| ||||||||||||||| | ||||||||||| ||||||| | |||||||||| ||||  ||||||||||||    
T  6789264 aaggctaaacttcacttttcgccctttaagtttcaaaatgttgcgattttggccccctgttaaataaaatggcaaaagtgaccccctatg 6789175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 159
Target Start/End: Original strand, 10447006 - 10447065
Alignment:
Q  101 ggctaaagtacacatttccccct-ttaagtttcaataagttgcgattttagccccctatg 159  Q
    ||||||||| ||| ||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  10447006 ggctaaagtgcacttttccccctcttaagtttcaaaaagttgcaattttagccccctatg 10447065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 241
Target Start/End: Original strand, 3927664 - 3927806
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagccca 198  Q
    ||||||||||| ||| ||||||||| ||| ||| || | ||||||||||| |||||| ||| |  ||||  |||| ||||  || |||||  ||||||||    
T  3927664 aaggctaaagtgcacttttccccctctaacttttaaaatgttgcgattttggccccccatgtatgaaaactacaattttggtcctctatgttttagccca 3927763  T
Q  199 tttacaatattagtccttctggacaattttgacttagtcaatg 241  Q
    ||| || | | ||||||| ||| |||||||||||| |||||||    
T  3927764 tttgcattttcagtccttttgggcaattttgacttggtcaatg 3927806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 241
Target Start/End: Complemental strand, 3928961 - 3928819
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagccca 198  Q
    ||||||||||| ||| ||||||||  ||| |||||| | ||||||||||| |||||||||| |  ||||  |||| |||| ||| |||||  |||||||     
T  3928961 aaggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccctatgtatgaaaaccacaattttggccctctatgttttagcccc 3928862  T
Q  199 tttacaatattagtccttctggacaattttgacttagtcaatg 241  Q
    ||| || | | ||||||| | | |||||||||||| |||||||    
T  3928861 tttgcattttcagtccttttaggcaattttgacttggtcaatg 3928819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 138 - 239
Target Start/End: Original strand, 50841322 - 50841423
Alignment:
Q  138 gttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttctggacaattttgacttagtc 237  Q
    ||||||||||| |||||||||  || ||||||||||||||   ||||||||  ||||||| ||| ||||| |||||||| |   ||||||||||||| ||    
T  50841322 gttgcgattttggccccctatagaaaaaaatgacaaatttagtcccctatgttttagcccctttgcaatagtagtccttttctccaattttgacttattc 50841421  T
Q  238 aa 239  Q
    ||    
T  50841422 aa 50841423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 13394536 - 13394620
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccct 185  Q
    ||||||||| ||| |||| |||  || |||| || | ||||||||||||||||||||| ||| |||||||||| |||| ||||||    
T  13394536 ggctaaagtgcacttttcgccccctatgttttaaaatgttgcgattttagccccctattaaaaaaaatgacaattttggccccct 13394620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 25011759 - 25011822
Alignment:
Q  125 taagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  25011759 taagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 25011822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 4357252 - 4357338
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctat 187  Q
    ||||||| | ||| |||| |||| |||||||||| | |||||||||||||| |||||| ||| |||||| ||||  |||| ||||||    
T  4357252 ggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttagctccctattaaaaaaaatggcaaaagtgacaccctat 4357338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 10448337 - 10448303
Alignment:
Q  125 taagtttcaataagttgcgattttagccccctatg 159  Q
    |||||||||| ||||||||||||||||||||||||    
T  10448337 taagtttcaaaaagttgcgattttagccccctatg 10448303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 13397981 - 13397892
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| | ||| |||| |||| |||||||||| |  |||| ||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  13397981 aaggctaaacttcacttttcgccctctaagtttcaaaatattgcaattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 13397892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 239
Target Start/End: Complemental strand, 17388243 - 17388174
Alignment:
Q  170 acaaatttgaccccctatgaattagcccatttacaatattagtccttctggacaattttgacttagtcaa 239  Q
    |||| |||| ||||| | |||||||||| ||||||||| ||||||||  || |||||||||||| |||||    
T  17388243 acaattttggccccccaagaattagcccctttacaatagtagtcctttaggtcaattttgacttggtcaa 17388174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 45633726 - 45633673
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaat 168  Q
    |||| |||||||||||| || | ||||||||||||||||||||| ||| |||||    
T  45633726 tttcgccctttaagttttaaaatgttgcgattttagccccctattaaaaaaaat 45633673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 2986700 - 2986773
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||| ||| |||||||||||  ||||||||||||    
T  2986700 tttcgccctttaagtttcaaaatgttgcgattttggccccctattaaaaaaaatgacaaaagtgaccccctatg 2986773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 11175905 - 11175994
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| | ||| |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  11175905 aaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 11175994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 8535688 - 8535616
Alignment:
Q  170 acaaatttgaccccctatgaattagcccatttacaatattagtccttctggacaattttgacttagtcaatgc 242  Q
    |||| |||||||||||| |||||||||| ||| ||||| ||||||||  || |||||||||||| ||||||||    
T  8535688 acaattttgaccccctaagaattagcccctttgcaatagtagtcctttaggtcaattttgacttggtcaatgc 8535616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 18538133 - 18538045
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  18538133 aggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 18538045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 25299090 - 25299018
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||| |||| |||||||||| | ||||||||||||||||||||| ||| |||||| ||||  ||||||||||||    
T  25299090 tttcgccctctaagtttcaaaatgttgcgattttagccccctattaaa-aaaatggcaaaagtgaccccctatg 25299018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 5819800 - 5819754
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaa 161  Q
    |||||||| ||||||||||| ||||||||||||| ||||| ||||||    
T  5819800 tttccccccttaagtttcaaaaagttgcgattttggccccatatgaa 5819754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Complemental strand, 2986991 - 2986906
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccct 185  Q
    |||||||||| ||| |||| | || || ||||||| | ||||||||||| ||||||||| ||| |||||| ||| |||| ||||||    
T  2986991 aggctaaagtgcacttttcactctctatgtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaattttggccccct 2986906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 6764007 - 6763934
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||| |||| |||||||||| | ||||||||||| | ||||||| ||| |||||| ||||  ||||||||||||    
T  6764007 tttcgccctctaagtttcaaaatgttgcgattttggtcccctattaaaaaaaatggcaaaagtgaccccctatg 6763934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 38840595 - 38840538
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagcccccta 157  Q
    |||||||||| ||| |||||||| |||| |||||| || |||| ||||||||||||||    
T  38840595 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttagcccccta 38840538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 15700746 - 15700834
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| ||| |||| ||| |||||||| || | ||||||||||| | ||||||| ||| |||||| || |  ||||||||||||    
T  15700746 aggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttggacccctattaaaaaaaatggcacaagtgaccccctatg 15700834  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 15735063 - 15735151
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| |||||||||| | ||||||||||| | ||||||| |||  ||||| ||||  ||||||||||||    
T  15735063 aggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggtcccctattaaaagaaatggcaaaagtgaccccctatg 15735151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 242
Target Start/End: Complemental strand, 43593 - 43470
Alignment:
Q  119 cccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttct 218  Q
    |||| ||||||||||| ||||||| |||||  || | |||  ||||||||||||||||| | ||| ||||  ||| ||| ||||||||| |||||||| |    
T  43593 cccccttaagtttcaaaaagttgcaattttgacctcttatttaataaaatgacaaatttaatcccttatgttttaacccctttacaatagtagtcctttt 43494  T
Q  219 ggacaattttgacttagtcaatgc 242  Q
    |  |||||||||||| ||||||||    
T  43493 gttcaattttgactttgtcaatgc 43470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 231
Target Start/End: Complemental strand, 49535 - 49404
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccat 199  Q
    |||||||||| ||| |||| ||| |||| ||| || ||||||| ||||| ||||||||| ||  ||||  |||| |||||||||||| || ||||| | |    
T  49535 aggctaaagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaaactacaattttgaccccctaagatttagctcct 49436  T
Q  200 ttacaatattagtccttctggacaattttgac 231  Q
    || |||  || |||||| ||| ||||||||||    
T  49435 ttgcaactttggtccttttggccaattttgac 49404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 6346 - 6438
Alignment:
Q  104 taaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcc 196  Q
    |||||| ||| ||||| || ||||||||||| ||||| |||||||||||||||||| |  ||||  |||| |||||||||||| || ||||||    
T  6346 taaagtgcacttttccgcccttaagtttcaaaaagttacgattttagccccctatgtacaaaaactacaattttgaccccctaagatttagcc 6438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 9822372 - 9822287
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgacccccta 186  Q
    ||||||||||| ||| |||| ||| |||||||| || |||||| ||||||||| |||||||||  |||||||||||  ||||||||||    
T  9822372 aaggctaaagtgcacttttcaccccttaagttttaaaaagttgtgattttagcaccctatgaa--aaaatgacaaaagtgacccccta 9822287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 10724297 - 10724212
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgacccccta 186  Q
    ||||||||||| ||| |||| ||| |||||||| || |||||| ||||||||| |||||||||  |||||||||||  ||||||||||    
T  10724297 aaggctaaagtgcacttttcaccccttaagttttaaaaagttgtgattttagcaccctatgaa--aaaatgacaaaagtgacccccta 10724212  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 273
Target Start/End: Complemental strand, 23621956 - 23621868
Alignment:
Q  185 tatgaattagcccatttacaatattagtccttctggacaattttgacttagtcaatgcatgtctggcacctagtaggatgccacatgtg 273  Q
    ||||||||||| | ||| ||||||||  || | ||| ||||||||||  |||||| || | | ||||||||||||||||||||||||||    
T  23621956 tatgaattagctcctttgcaatattaacccctttggtcaattttgacccagtcaacgcctatgtggcacctagtaggatgccacatgtg 23621868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 42271642 - 42271552
Alignment:
Q  95 aaagaaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccct 185  Q
    ||||||||||||||| ||| |||| |||  || |||| || | ||||| ||||| ||||||||| ||| |||||||||| |||| ||||||    
T  42271642 aaagaaggctaaagtgcacttttcgccccctatgttttaaaatgttgcaatttttgccccctattaaaaaaaatgacaattttggccccct 42271552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 20636638 - 20636706
Alignment:
Q  120 ccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||| ||||||| || | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  20636638 ccctctaagttttaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 20636706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 20638510 - 20638578
Alignment:
Q  120 ccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||| ||||||| || | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  20638510 ccctctaagttttaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 20638578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 47525468 - 47525412
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagcccccta 157  Q
    ||||||||| ||| ||||||||| ||| |||||| || |||| ||||||||||||||    
T  47525468 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttagcccccta 47525412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 104 - 213
Target Start/End: Complemental strand, 39844295 - 39844184
Alignment:
Q  104 taaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatg--aaataaaatgacaaatttgaccccctatgaattagcccattt 201  Q
    |||||| ||| ||| |||| |||||||| || ||||||| |||||| |||| ||||  ||| ||||||||||||||| ||| |||| ||||||||| |||    
T  39844295 taaagtgcaccttttcccccttaagttttaaaaagttgcaattttaaccccttatgtaaaaaaaaatgacaaatttggccctctataaattagccccttt 39844196  T
Q  202 acaatattagtc 213  Q
     ||||| |||||    
T  39844195 gcaatagtagtc 39844184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 194
Target Start/End: Original strand, 39843054 - 39843144
Alignment:
Q  104 taaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattag 194  Q
    |||||| ||| ||| |||| |||||||| || ||||||| ||||||| |||||||| ||  |||||||||||||| ||| |||| ||||||    
T  39843054 taaagtgcactttttcccccttaagtttgaaaaagttgcaattttagtcccctatgtaaagaaatgacaaatttggccctctataaattag 39843144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 48907598 - 48907509
Alignment:
Q  98 gaaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| | ||| |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  48907598 gaaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaa-aaaatggcaaaagtgaccccctatg 48907509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 26628315 - 26628242
Alignment:
Q  115 tttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||| |||| |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  26628315 tttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 26628242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 27853056 - 27852968
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| |||||||||| | ||||| ||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  27853056 aggctaaacttcacttttcgccctctaagtttcaaaatgttgcaattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 27852968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 187
Target Start/End: Original strand, 13080894 - 13080980
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctat 187  Q
    ||||||| | ||| |||| |||| |||||||||| | ||||||||||| || |||||| ||| |||||| ||||  |||||||||||    
T  13080894 ggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggctccctattaaaaaaaatggcaaaagtgaccccctat 13080980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 3329117 - 3329032
Alignment:
Q  101 ggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgacccccta 186  Q
    ||||||| | ||| |||| |||| |||||||||| | ||||||||||| ||||||||| ||| ||||||  |||  ||||||||||    
T  3329117 ggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggaaaaagtgacccccta 3329032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 26722570 - 26722638
Alignment:
Q  138 gttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccatttacaata 207  Q
    ||||||||||| ||||||||| ||| |||||||||| ||||  ||||||||| ||||||| ||| |||||    
T  26722570 gttgcgattttggccccctattaaa-aaaatgacaattttggtcccctatgatttagcccctttgcaata 26722638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 33279583 - 33279667
Alignment:
Q  98 gaaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgacccc 183  Q
    |||||||||| | ||| |||| ||||||||||||  | | ||||||||||||| ||||||| ||| |||||| ||| |||||||||    
T  33279583 gaaggctaaactgcacttttcgccctttaagttttgaaatgttgcgattttagacccctattaaa-aaaatggcaattttgacccc 33279667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 54987108 - 54987050
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatg 159  Q
    |||| |||||| ||| |||||||||  ||||||||| ||||||||||||||| ||||||||    
T  54987108 aaggttaaagtgcacttttccccct--aagtttcaaaaagttgcgattttagtcccctatg 54987050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 25179577 - 25179665
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||| | ||| |||| |||| ||||||| || | ||||||||||| ||||||||| ||| |||||  ||||  ||||||||||||    
T  25179577 aggctaaacttcacttttcgccctctaagttttaaaatgttgcgattttggccccctattaaaaaaaatagcaaaagtgaccccctatg 25179665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 186
Target Start/End: Original strand, 51347281 - 51347353
Alignment:
Q  115 tttccccct-ttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgacccccta 186  Q
    ||||||||| |||||||| || ||||||| ||||| | || |||||||  |||||||||| ||||||||||||    
T  51347281 tttccccctcttaagtttgaaaaagttgcaattttggtcctctatgaacaaaaatgacaattttgacccccta 51347353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 188
Target Start/End: Original strand, 61812 - 61901
Alignment:
Q  99 aaggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    ||||||||| | ||| |||| || | |||||||||| | ||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  61812 aaggctaaacttcacttttcgccttctaagtttcaaaatgttgcgattttggccccctattaaaaaaaatggcaaaagtgaccccctatg 61901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 30487 - 30573
Alignment:
Q  18 gaatatacattcatatgcttacttcttatgtcaatgcac------ctattcagttctttattttgaaagcatcatctataaataaag 98  Q
    |||||| ||||||||||||||| ||| |||||| |||||      || |||||||||||||||||| || |||||||||||| ||||    
T  30487 gaatattcattcatatgcttacatctcatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaag 30573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1875 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 755 - 840
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccct 185  Q
    |||||||| | ||| |||| ||| ||||||||| | | ||||||||||| ||||||||| ||| |||||| ||| |||| ||||||    
T  755 aggctaaactgcacttttcaccccttaagtttcgaaatgttgcgattttggccccctattaaaaaaaatggcaattttggccccct 840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 4305 - 4348
Alignment:
Q  124 ttaagtttcaataagttgcgattttagccccctatgaaataaaat 168  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||||    
T  4305 ttaagtttcaaaaagttgcgattttggccccctat-aaataaaat 4348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 2352 - 2266
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| ||| |||| || | ||||||| || ||||||||||||| ||||||||| ||| |||||| ||||  ||||||||||||    
T  2352 aggctaaagtccacttttcgccttctaagttttaa-aagttgcgattttggccccctattaaa-aaaatggcaaaagtgaccccctatg 2266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 49658 - 49746
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| ||| |||| ||| |||||||| || | ||||||||||| | ||||||| ||| |||||| || |  ||||||||||||    
T  49658 aggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttggacccctattaaaaaaaatggcacaagtgaccccctatg 49746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 188
Target Start/End: Original strand, 62197 - 62285
Alignment:
Q  100 aggctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatg 188  Q
    |||||||||| ||| |||| ||| |||||||| || | ||||||||||| | ||||||| ||| |||||| || |  ||||||||||||    
T  62197 aggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttggacccctattaaaaaaaatggcacaagtgaccccctatg 62285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 241
Target Start/End: Complemental strand, 8003 - 7880
Alignment:
Q  120 ccctttaagtttcaataagttgcgattttagccccctat--gaaataaaatgacaaatttgaccccctatgaattagcccatttacaatattagtccttc 217  Q
    |||| ||||||| || ||||| ||||||||| | |||||  ||| |||||  | || ||| ||||||||||| ||||||| ||| |||  ||  |||||     
T  8003 ccctctaagtttgaaaaagttacgattttagtctcctatatgaactaaaactagaattttaaccccctatgatttagcccctttgcaactttgatccttt 7904  T
Q  218 tggacaattttgacttagtcaatg 241  Q
    ||| ||||||||||||||||||||    
T  7903 tggccaattttgacttagtcaatg 7880  T

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Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 61559 - 61419
Alignment:
Q  102 gctaaagtacacatttccccctttaagtttcaataagttgcgattttagccccctatgaaataaaatgacaaatttgaccccctatgaattagcccattt 201  Q
    |||||||| ||| ||||| || |||| |||||| || |||| |||||||||||||| | |  ||||  | || |||| |||||||||| ||||||| |||    
T  61559 gctaaagtgcacttttcctcccttaattttcaaaaacttgcaattttagccccctaagtacaaaaactataattttggccccctatgatttagccctttt 61460  T
Q  202 acaatattagtccttctggacaattttgacttagtcaatgc 242  Q
     ||   || |||||| ||| ||||||||||  |||||||||    
T  61459 gcatctttggtccttttggtcaattttgaccaagtcaatgc 61419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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