View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_25 (Length: 299)
Name: NF11175_low_25
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_25 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 299
Target Start/End: Complemental strand, 7078217 - 7077926
Alignment:
| Q |
7 |
aggagcacagaggtggaagatattgtaaatgcgattaaatcaacctctttgatgtaatttctcgttagnnnnnnnngggtcttgtatatatttttaatgg |
106 |
Q |
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| T |
7078217 |
aggaacacagaggtggaagatattgtaaatgcgattaaatcaacctcttggatttaatttctcattagaaaaaaa-gggtcttgtatatatttttaatgg |
7078119 |
T |
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| Q |
107 |
cttccaaacccttttcttcatcataattcttgatttagggtgtttattttggtgggtcgaataccggacgattgtttgaattgatgatgaatatgaaaga |
206 |
Q |
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| T |
7078118 |
cttccaaacccttttcttcatcataattcttgatttagggtgtttgttttggtgggtcgaataccagacgattgtatgaattgatgatgaatatgaaaga |
7078019 |
T |
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| Q |
207 |
tattgtaaatgcaattaaattaacctcttggatgtgaattctcgttagaaaaaagagtgtcttgtatattttttaaatggtttccaaaccctc |
299 |
Q |
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| T |
7078018 |
tattgtaaatgcaatcaaattaacctcttggatgtgaattctcgttagaaaaaagagtgtcttgtatattttttaaatggtttccaaaccctc |
7077926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 163
Target Start/End: Complemental strand, 7078022 - 7077882
Alignment:
| Q |
23 |
aagatattgtaaatgcgattaaatcaacctctttgatgtaatttctcgttagnnnnnnnngggtcttgtatatatttttaatggcttccaaacccttttc |
122 |
Q |
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| T |
7078022 |
aagatattgtaaatgcaatcaaattaacctcttggatgtgaattctcgttagaaaaaagagtgtcttgtatattttttaaatggtttccaaaccctcttc |
7077923 |
T |
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| Q |
123 |
ttcatcataattcttgatttagggtgtttattttggtgggt |
163 |
Q |
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| T |
7077922 |
ttcatcataatttttgatttagggtgtttgtttttgtgggt |
7077882 |
T |
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