View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11175_low_27 (Length: 293)
Name: NF11175_low_27
Description: NF11175
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11175_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 21432923 - 21432649
Alignment:
| Q |
1 |
atgcatcaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacg |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21432923 |
atgcattaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacg |
21432824 |
T |
|
| Q |
101 |
atgaagagaagtggtatttagcagtgtgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactcta |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
21432823 |
atgaagggaagtggtatttagcagtgtgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattccgtgtgtgtaagcttcgcactcta |
21432724 |
T |
|
| Q |
201 |
gaaatttcctcctcctgaagtcttagtccctgagcatacaaaaatctccatatttaaatcatgtagaatagttgg |
275 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21432723 |
gaaatttcctcctcatgaagtcttagtccctgagcatacaaaaatctccatatttaaatcatgtagaatagttgg |
21432649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 24 - 275
Target Start/End: Original strand, 27099529 - 27099780
Alignment:
| Q |
24 |
aaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagca |
123 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| ||||||| || |||||||||| |||| ||||| ||||||| ||||||||||||| | |
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| T |
27099529 |
aaatggtgcattagttggcacataccttctagagaatctgtataggttttcaattgcatttcttttgggttcaaaggatgaagggaagtggtatttatct |
27099628 |
T |
|
| Q |
124 |
gtgtgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtct |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
27099629 |
gtgtgtgatctaagtccagaaccaagcaaagctttctacggtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcatcatgaagtct |
27099728 |
T |
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| Q |
224 |
tagtccctgagcatacaaaaatctccatatttaaatcatgtagaatagttgg |
275 |
Q |
| |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
27099729 |
tagtccctgaacatatgaaaatctccatatttaaatcatgtagaatagttgg |
27099780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 27151736 - 27151459
Alignment:
| Q |
1 |
atgcatcaagtaaaacttctataaaatggtgcattggttggcacataccttctagagaatctgtacaggtttttaaatgcatttcttctggg-ctcaaac |
99 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| | ||||| |||| |||||||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
27151736 |
atgcatcaagtaaaacttttataaaatggtgcattcggtggcatatactttctagagaatctgtatagatttttaaatgcatttcttctggggctcaaat |
27151637 |
T |
|
| Q |
100 |
gatgaagagaagtggtatttagcagtgtgtgatctaagtccagaa---ccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcac |
196 |
Q |
| |
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||||||| | |||||||||||||||||||||||||| | |||||| ||||||||||||||||| ||||| ||||||| |||||| |||||||| ||| |
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| T |
27151636 |
gatgaaggggagtggtatttagcagtgtgtgatctaggcccagaataaccaagcaaagctttctatggttta-taaattctgtgtgtctaagctgcacac |
27151538 |
T |
|
| Q |
197 |
tctagaaatttcctcctcctgaagtcttagtccctgagcatacaaaaatctccatatttaaatcatgtagaatagttgg |
275 |
Q |
| |
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|||| |||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
27151537 |
tctacaaatttcctcatcgtgaagtcttagtccctgaacatacaaaaatctccatatttaaatcatgtagaatagttgg |
27151459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 26988829 - 26988599
Alignment:
| Q |
28 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtg |
126 |
Q |
| |
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||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26988829 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg |
26988730 |
T |
|
| Q |
127 |
tgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtcttag |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| || | |||| |||| |
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| T |
26988729 |
tgtgatctaagtctagaaccaagcaaagctttctacgatttaataaattcttcacgtctctgctgcgcactctagaaatttccttatcatcaagttttag |
26988630 |
T |
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| Q |
227 |
tccctgagcatacaaaaatctccatatttaa |
257 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |
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| T |
26988629 |
tccctgaacatacaaaaatttccatatttaa |
26988599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 46 - 256
Target Start/End: Original strand, 27076449 - 27076659
Alignment:
| Q |
46 |
taccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaac |
145 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
27076449 |
taccttctagagaatctgtatgagtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtgtgtgatctaggtctagaac |
27076548 |
T |
|
| Q |
146 |
caagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtcttagtccctgagcatacaaaaat |
245 |
Q |
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||| ||||||||||||| |||||||||||| || || || |||||||||||||||||||| || | |||| ||||||||||| | |||||||| |
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| T |
27076549 |
caaacaaagctttctacgatttaataaattcttcacgtctatgccgcgcactctagaaatttccttatcatcaagttttagtccctgaaaacacaaaaat |
27076648 |
T |
|
| Q |
246 |
ctccatattta |
256 |
Q |
| |
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||||||||||| |
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| T |
27076649 |
ctccatattta |
27076659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 46 - 257
Target Start/End: Complemental strand, 27028128 - 27027917
Alignment:
| Q |
46 |
taccttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtgtgtgatctaagtccagaac |
145 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
27028128 |
taccttctagagaatctgtatgggtttttaaatgcatttcttctgagctcaaacggtaaagaaaagtggtatttagcagtgtgtgatctaggtccagaac |
27028029 |
T |
|
| Q |
146 |
caagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtcttagtccctgagcatacaaaaat |
245 |
Q |
| |
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||| ||||||||||||| |||||||||||| || || | |||||||||||||||||||| || | |||| ||||||||||| |||||||||| |
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| T |
27028028 |
caaacaaagctttctacgatttaataaattcttcacgtctatgtcgcgcactctagaaatttccttatcatcaagttttagtccctgaaaatacaaaaat |
27027929 |
T |
|
| Q |
246 |
ctccatatttaa |
257 |
Q |
| |
|
|||||||||||| |
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|
| T |
27027928 |
ctccatatttaa |
27027917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 28 - 257
Target Start/End: Complemental strand, 34690905 - 34690675
Alignment:
| Q |
28 |
ggtgcattggttggcacat-accttctagagaatctgtacaggtttttaaatgcatttcttctgggctcaaacgatgaagagaagtggtatttagcagtg |
126 |
Q |
| |
|
||||||| |||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34690905 |
ggtgcatcggttggcatattaccttctagagaatctgtatgggtttttaaatgcatttcttctgggctcaaacgatgaagggaagtggtatttagcagtg |
34690806 |
T |
|
| Q |
127 |
tgtgatctaagtccagaaccaagcaaagctttctacagtttaataaattccgtgtgtgtaagctgcgcactctagaaatttcctcctcctgaagtcttag |
226 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||| || | ||||||||||||||||||||||| || | |||| |||| |
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|
| T |
34690805 |
tgtgatctaagtcaagaaccaagcaaagctttctacgatttaataaattcttcacgtctctgctgcgcactctagaaatttccttatcatcaagttttag |
34690706 |
T |
|
| Q |
227 |
tccctgagcatacaaaaatctccatatttaa |
257 |
Q |
| |
|
||||||| ||||||||||| ||||||||||| |
|
|
| T |
34690705 |
tccctgaacatacaaaaatttccatatttaa |
34690675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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